Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2299

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2298: 10666 - K15148 MED7 mediator of RNA polymerase II transcription subunit 7, at 555441 to 556485 10666 mRNA_2299: 10667 - Hypothetical Protein, at 557055 to 559337 10667 mRNA_2300: 10668 - Hypothetical Protein, at 559511 to 559996 10668 mRNA_2301: 10669 - HMMPfam-Transmembrane amino acid transporter protein-PF01490, at 560287 to 562676 10669

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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556,541 + -0.1
556,659 + 0.5
556,673 - -1.2
556,700 - 0.3
556,852 - 0.5
556,926 - -0.6
556,944 + -0.3
557,102 - 0.3
557,475 + 10667 mRNA_2299 0.18 -0.5
557,978 - 10667 mRNA_2299 0.40 1.2
558,280 + 10667 mRNA_2299 0.54 1.1
558,835 - 10667 mRNA_2299 0.78 0.8
558,843 - 10667 mRNA_2299 0.78 1.1
559,141 + -0.4
559,143 - -0.4
559,301 - 0.2
559,407 - 0.6
559,427 + -0.2
559,440 - 1.6
559,446 - 0.3
559,600 + 10668 mRNA_2300 0.18 -0.7
559,618 + 10668 mRNA_2300 0.22 1.0
559,637 + 10668 mRNA_2300 0.26 0.3
559,743 + 10668 mRNA_2300 0.48 0.2
559,772 - 10668 mRNA_2300 0.54 -0.2
559,806 + 10668 mRNA_2300 0.61 1.6
559,869 - 10668 mRNA_2300 0.74 -0.6
559,885 - 10668 mRNA_2300 0.77 0.1
559,895 - 10668 mRNA_2300 0.79 1.2
559,901 + 10668 mRNA_2300 0.80 0.1
559,931 + 10668 mRNA_2300 0.86 -0.4
559,936 + 10668 mRNA_2300 0.87 0.3
559,936 + 10668 mRNA_2300 0.87 0.0
559,936 - 10668 mRNA_2300 0.87 1.5
559,952 - 0.2
559,958 - 0.0
559,977 + 0.1
560,041 + 0.6
560,066 - -0.0
560,093 + -0.6
560,149 - -1.0
560,156 + -0.2
560,158 + 1.4
560,178 + 1.4
560,247 + 1.6