Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2297

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2296: 10664 - K05289 GAA1 glycosylphosphatidylinositol transamidase, at 549665 to 551990 10664 mRNA_2297: 10665 - HMMPfam-Acyltransferase-PF01553,SMART-Phosphate acyltransferases-SM00563,SUPERFAMILY--SSF69593, at 552680 to 555232 10665 mRNA_2298: 10666 - K15148 MED7 mediator of RNA polymerase II transcription subunit 7, at 555441 to 556485 10666

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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552,154 + 1.6
552,155 + -0.3
552,288 - -0.4
552,292 + 0.5
552,328 + -0.9
552,430 - 0.5
552,442 - 0.5
552,444 - 0.7
552,449 - -1.7
552,450 - 0.3
552,460 + -0.8
552,462 - -0.4
552,467 + 1.2
552,568 + -1.1
552,590 + -0.7
552,590 + -0.1
552,599 - -0.5
552,609 + 0.2
552,654 + 2.2
552,733 + 3.1
552,774 + -0.4
552,893 - -1.8
553,042 - 10665 mRNA_2297 0.14 -0.5
553,197 - 10665 mRNA_2297 0.20 0.2
553,312 - 10665 mRNA_2297 0.25 0.2
553,351 - 10665 mRNA_2297 0.26 0.5
553,475 - 10665 mRNA_2297 0.31 1.4
553,953 + 10665 mRNA_2297 0.50 1.4
554,045 - 10665 mRNA_2297 0.53 1.9
554,322 + 10665 mRNA_2297 0.64 -0.0
555,638 + 10666 mRNA_2298 0.19 0.2
555,642 - 10666 mRNA_2298 0.19 0.5
555,653 - 10666 mRNA_2298 0.20 0.6
555,653 + 10666 mRNA_2298 0.20 0.2