Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2281

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2280: 10648 - HMMPfam-B-block binding subunit of TFIIIC-PF04182, at 511379 to 518850 10648 mRNA_2281: 10649 - K12190 VPS36, EAP45 ESCRT-II complex subunit VPS36, at 519083 to 521393 10649 mRNA_2282: 10650 - HMMPfam-Conidiation protein 6-PF10346, at 522236 to 522967 10650

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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518,852 + -0.6
518,966 + 0.2
518,985 - -1.7
518,998 - 0.2
519,004 - 1.2
519,027 - 1.3
519,087 + 1.3
519,376 - 10649 mRNA_2281 0.13 0.2
520,061 + 10649 mRNA_2281 0.42 -0.8
520,370 + 10649 mRNA_2281 0.56 -0.7
521,269 + 0.3
521,291 + -1.5
521,326 + 0.5
521,403 - 1.8
521,410 + -0.0
521,561 - -1.3
521,564 - -0.7
521,567 - -0.1
521,568 + 0.9
521,568 + 0.2
521,569 - 0.4
521,569 + -0.5
521,603 - -0.6
521,621 - -1.0
521,627 - 0.2
521,643 + -0.2
521,655 - -0.4
521,657 + -0.2
521,701 + 0.8
521,703 - 0.1
521,713 + 1.7
521,720 - -0.7
521,865 + 1.3
521,914 + -0.4
522,015 + 0.1
522,045 + -1.1