Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2277

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2276: 10644 - K02954 RP-S14, MRPS14, rpsN small subunit ribosomal protein S14, at 501721 to 502247 10644 mRNA_2277: 10645 - K13717 OTUD3 OTU domain-containing protein 3, at 502464 to 504545 10645 mRNA_2278: 10646 - KOG1118 Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation, at 504709 to 506668 10646

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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502,297 - -1.7
502,300 + 0.2
502,301 + 1.0
502,310 + -0.9
502,311 - 0.8
502,416 + 2.4
502,422 + 1.8
502,437 - 1.0
502,438 - 3.1
502,441 + -1.5
502,443 + 0.4
502,445 + -0.9
502,446 - 0.6
502,446 - -0.5
502,497 - 1.0
502,593 - 0.7
502,610 - 0.3
502,612 - -0.3
502,612 - 0.9
502,625 + 0.2
502,713 - 10645 mRNA_2277 0.12 1.3
502,731 - 10645 mRNA_2277 0.13 0.1
502,737 + 10645 mRNA_2277 0.13 -0.3
502,743 + 10645 mRNA_2277 0.13 1.9
502,850 + 10645 mRNA_2277 0.19 -1.2
503,364 + 10645 mRNA_2277 0.43 -0.1
503,378 + 10645 mRNA_2277 0.44 -0.4
503,491 + 10645 mRNA_2277 0.49 -0.1
503,623 + 10645 mRNA_2277 0.56 2.6
503,798 + 10645 mRNA_2277 0.64 -0.7
504,244 - 10645 mRNA_2277 0.85 -1.1
504,535 - 2.0
504,809 - 1.5
504,920 + 10646 mRNA_2278 0.11 -1.5
505,202 - 10646 mRNA_2278 0.25 0.4
505,524 + 10646 mRNA_2278 0.42 0.7