Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2213

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2212: 10580 - K04441 P38 p38 MAP kinase, at 371280 to 373458 10580 mRNA_2213: 10581 - Hypothetical Protein, at 373795 to 375886 10581 mRNA_2214: 10582 - K06970 rlmF 23S rRNA (adenine1618-N6)-methyltransferase, at 376563 to 378868 10582

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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373,437 + 0.5
373,484 - -0.6
373,486 - 1.0
373,903 + 0.9
374,188 + 10581 mRNA_2213 0.19 -0.3
374,444 + 10581 mRNA_2213 0.31 3.6
374,591 - 10581 mRNA_2213 0.38 -0.0
374,617 - 10581 mRNA_2213 0.39 1.5
375,000 + 10581 mRNA_2213 0.58 -0.6
375,378 + 10581 mRNA_2213 0.76 0.2
375,619 - 10581 mRNA_2213 0.87 0.6
375,628 + 10581 mRNA_2213 0.88 -1.9
375,768 + -0.8
375,919 + 0.5
375,931 - -0.6
375,932 - 1.4
376,030 - 0.3
376,061 - 1.0
376,069 + -1.2
376,076 - -0.9
376,090 - 0.3
376,095 - -0.6
376,095 + 2.3
376,097 - -0.7
376,098 + -0.0
376,098 + -1.3
376,111 + 1.5
376,113 + 1.4
376,132 + 1.0
376,137 + 0.5
376,154 - 0.3
376,164 + 1.1
376,169 - -1.6
376,174 + 1.8
376,180 - -0.3
376,181 - 1.4
376,186 + -0.5
376,187 - -0.6
376,188 - 0.5
376,189 - 0.0
376,189 - -0.2
376,197 - 0.3
376,200 - 0.5
376,203 + 0.2
376,207 - 1.6
376,212 + -0.1
376,222 + 0.1
376,224 + 0.4
376,229 - 0.4
376,241 - -0.3
376,253 + 0.1
376,266 - 1.1
376,269 + 0.5
376,284 + -0.3
376,299 + -0.6
376,376 - -1.2
376,391 + -0.3
376,540 - -1.2
376,542 + -0.3
376,542 + -0.0
376,545 - -0.7
376,545 + 1.4
376,555 + 0.9