Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2210

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2209: 10577 - K14157 AASS alpha-aminoadipic semialdehyde synthase, at 359191 to 363010 10577 mRNA_2210: 10578 - K20407 MIOS, MIO WD repeat-containing protein mio, at 363303 to 367211 10578 mRNA_2211: 10579 - K09486 HYOU1 hypoxia up-regulated 1, at 367556 to 370614 10579

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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362,579 - 10577 mRNA_2209 0.89 -2.5
362,588 + 10577 mRNA_2209 0.89 -0.4
362,678 - 1.2
362,708 - 3.4
362,708 + 1.9
362,835 + 0.3
362,835 + 0.6
362,861 - 1.0
362,864 + 0.4
362,868 + -0.3
362,959 - 1.3
362,965 + 0.6
362,985 - 0.4
362,986 + 1.4
362,991 - -0.1
362,993 - 0.7
362,995 - 0.9
363,022 - 0.2
363,022 - 0.8
363,023 - -1.0
363,024 + 0.1
363,024 + -0.3
363,063 - 0.7
363,065 + -0.5
363,101 - 1.0
363,152 - -0.5
363,166 - 0.0
363,179 - -1.0
363,186 - -0.8
363,223 - 0.0
363,276 - 0.3
363,466 + 0.6
363,626 - 0.2
363,667 + -0.0
363,934 + 10578 mRNA_2210 0.16 -0.6
364,151 - 10578 mRNA_2210 0.22 0.2
364,823 + 10578 mRNA_2210 0.39 1.8
364,834 + 10578 mRNA_2210 0.39 1.5
365,132 - 10578 mRNA_2210 0.47 0.1
365,165 - 10578 mRNA_2210 0.48 0.5
365,561 + 10578 mRNA_2210 0.58 0.8
365,581 - 10578 mRNA_2210 0.58 -0.4
366,140 + 10578 mRNA_2210 0.73 1.4
366,283 - 10578 mRNA_2210 0.76 -1.8
366,324 + 10578 mRNA_2210 0.77 -0.1
366,404 - 10578 mRNA_2210 0.79 -0.3
366,870 + 1.6
366,988 - -0.5
367,265 + -0.8
367,297 - 1.0
367,339 + 1.6
367,360 + 1.1
367,447 - 1.4
367,477 + 0.0
367,477 + -1.8
367,477 + 0.6