Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2209

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2208: 10576 - K13621 BTA1 betaine lipid synthase, at 355291 to 358512 10576 mRNA_2209: 10577 - K14157 AASS alpha-aminoadipic semialdehyde synthase, at 359191 to 363010 10577 mRNA_2210: 10578 - K20407 MIOS, MIO WD repeat-containing protein mio, at 363303 to 367211 10578

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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358,265 + 0.1
358,463 + 1.8
358,508 - 0.7
358,584 + 0.4
358,718 - -0.3
358,889 + 0.6
358,895 - 0.8
358,915 + 0.0
358,942 - 0.9
359,064 + -0.8
359,164 - 0.2
359,195 + 0.9
359,240 + -0.5
359,312 - -3.7
359,579 - 10577 mRNA_2209 0.10 0.3
359,787 + 10577 mRNA_2209 0.16 -0.2
359,823 + 10577 mRNA_2209 0.17 0.9
360,076 + 10577 mRNA_2209 0.23 0.0
360,526 + 10577 mRNA_2209 0.35 1.0
360,826 + 10577 mRNA_2209 0.43 -0.7
360,829 + 10577 mRNA_2209 0.43 -0.9
361,254 + 10577 mRNA_2209 0.54 -0.9
361,534 - 10577 mRNA_2209 0.61 -0.1
361,686 - 10577 mRNA_2209 0.65 0.4
361,846 + 10577 mRNA_2209 0.70 -0.4
362,279 + 10577 mRNA_2209 0.81 1.0
362,579 - 10577 mRNA_2209 0.89 -2.5
362,588 + 10577 mRNA_2209 0.89 -0.4
362,678 - 1.2
362,708 - 3.4
362,708 + 1.9
362,835 + 0.3
362,835 + 0.6
362,861 - 1.0
362,864 + 0.4
362,868 + -0.3
362,959 - 1.3
362,965 + 0.6
362,985 - 0.4
362,986 + 1.4
362,991 - -0.1
362,993 - 0.7
362,995 - 0.9
363,022 - 0.2
363,022 - 0.8
363,023 - -1.0
363,024 + 0.1
363,024 + -0.3
363,063 - 0.7
363,065 + -0.5
363,101 - 1.0
363,152 - -0.5
363,166 - 0.0
363,179 - -1.0
363,186 - -0.8
363,223 - 0.0
363,276 - 0.3
363,466 + 0.6
363,626 - 0.2
363,667 + -0.0
363,934 + 10578 mRNA_2210 0.16 -0.6