Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2202

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2201: 10569 - K03005 RPA49, POLR1E DNA-directed RNA polymerase I subunit RPA49, at 339616 to 341199 10569 mRNA_2202: 10570 - K00365 uaZ urate oxidase, at 341518 to 342881 10570 mRNA_2203: 10571 - K13339 PEX6, PXAAA1 peroxin-6, at 343203 to 347570 10571

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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341,027 - 10569 mRNA_2201 0.89 1.5
341,047 + 1.3
341,189 - -0.1
341,238 + 0.5
341,348 - 1.0
341,502 - 0.4
341,513 - -0.2
341,523 + 0.1
341,562 - 0.2
341,580 - 1.4
341,586 + 1.1
341,660 + 10570 mRNA_2202 0.10 2.6
341,727 + 10570 mRNA_2202 0.15 1.9
341,844 + 10570 mRNA_2202 0.24 1.0
341,909 + 10570 mRNA_2202 0.29 0.8
341,924 + 10570 mRNA_2202 0.30 -0.6
342,046 - 10570 mRNA_2202 0.39 -0.7
342,076 - 10570 mRNA_2202 0.41 0.3
342,162 - 10570 mRNA_2202 0.47 0.4
342,344 + 10570 mRNA_2202 0.61 1.5
342,356 + 10570 mRNA_2202 0.61 0.2
342,511 + 10570 mRNA_2202 0.73 0.2
342,618 - 10570 mRNA_2202 0.81 -0.1
342,731 - 10570 mRNA_2202 0.89 0.2
342,744 + 10570 mRNA_2202 0.90 1.8
342,762 - 0.5
342,768 - -0.5
342,769 + 0.2
342,770 - 0.2
342,772 - -0.8
342,780 + 1.5
342,800 + -0.4
342,853 + 0.7
342,902 + 2.9
342,946 - -0.1
342,956 + -0.1
342,967 + -0.0
342,978 + 0.4
342,994 - -1.2
343,006 + -0.3
343,018 - -0.5
343,023 - 1.2
343,081 + 0.4
343,085 - -0.6
343,113 - 0.8
343,122 - 0.5
343,127 - -0.2
343,131 + 2.4
343,140 + 1.0
343,202 - -0.1
343,243 - 1.4
343,255 - 0.3
343,270 - -1.7
343,292 - -0.2
343,297 + -1.1
343,496 - -0.8