Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2194

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2193: 10561 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 310220 to 312834 10561 mRNA_2194: 10562 - BLAST ER to Golgi transport-related protein, putative [Cryp..., at 313322 to 318107 10562

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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312,469 - 10561 mRNA_2193 0.86 0.0
312,482 + 10561 mRNA_2193 0.87 0.1
312,584 - 0.5
312,626 + -0.2
312,631 + -0.1
312,724 - 0.8
312,759 - -0.5
312,787 - 0.8
312,918 + -0.6
312,919 - 0.8
312,919 - 1.0
312,925 + 2.3
312,925 - 1.8
312,933 + -0.1
312,933 + -2.9
312,935 - -0.6
312,936 + -1.0
312,938 - 1.4
312,938 - -0.1
312,940 + 0.1
312,945 + -1.1
312,945 + 1.3
312,945 + -0.9
312,947 + -0.2
312,951 + 0.3
312,955 - -0.7
312,960 - 0.0
312,961 + -0.1
312,961 + 0.3
312,965 + -0.3
312,969 - 1.1
312,971 + -0.5
312,975 - -0.2
312,987 - -0.3
312,988 - 0.0
312,988 + -1.3
312,989 + 3.8
312,996 + 1.9
312,997 - -0.6
313,019 + 2.6
313,099 - 0.7
313,112 + -0.6
313,113 + -0.4
313,122 + -0.9
313,133 + -0.7
313,199 - -0.4
313,201 - -0.1
313,203 + 0.4
313,206 - 1.6
313,349 - -0.1
313,508 - -1.1
313,515 + 0.1
313,516 - 0.4
313,697 + 1.1
314,385 - 10562 mRNA_2194 0.22 0.5
314,811 - 10562 mRNA_2194 0.31 1.2
314,849 - 10562 mRNA_2194 0.32 0.8
314,942 - 10562 mRNA_2194 0.34 -0.0
315,106 - 10562 mRNA_2194 0.37 0.4
315,107 + 10562 mRNA_2194 0.37 0.9
315,116 + 10562 mRNA_2194 0.37 1.4
315,212 - 10562 mRNA_2194 0.39 1.3
315,248 + 10562 mRNA_2194 0.40 0.7
315,502 - 10562 mRNA_2194 0.46 -0.1
315,511 - 10562 mRNA_2194 0.46 -0.1
315,512 - 10562 mRNA_2194 0.46 -0.6
315,569 - 10562 mRNA_2194 0.47 1.2
316,122 + 10562 mRNA_2194 0.59 1.4
316,134 + 10562 mRNA_2194 0.59 2.4
316,220 - 10562 mRNA_2194 0.61 0.3
316,533 + 10562 mRNA_2194 0.67 2.0
316,861 - 10562 mRNA_2194 0.74 1.3
317,145 - 10562 mRNA_2194 0.80 -0.2
317,313 - 10562 mRNA_2194 0.83 1.0
317,318 - 10562 mRNA_2194 0.83 2.4
317,582 - 10562 mRNA_2194 0.89 -1.0
317,854 - 1.8
317,892 - 0.4
317,893 + 0.6
318,046 - 1.0
318,169 + 1.6
318,170 + 2.4
318,202 + 0.1
318,205 + 0.2
318,217 + 1.4
318,250 - -0.9
318,339 + -0.7
318,387 - 0.3
318,387 + -1.0
318,390 + 0.8
318,391 - 0.8
318,446 - -0.5
318,739 - -0.3
318,774 + -0.6
318,978 + 0.0
319,016 + -0.4
319,059 + 1.1
319,069 + 0.5