Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2185

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2184: 10552 - Hypothetical Protein, at 286236 to 287917 10552 mRNA_2185: 10553 - HMMPfam-Copper fist DNA binding domain-PF00649,PRINTS-Copper fist domain signature-PR00617,ProSiteProfiles-Copper-fist DNA-binding domain profile.-PS50073,SMART-Copper-Fist-SM00412,SMART--SM01090,SUPERFAMILY--SSF57879, at 288686 to 288844 10553

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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288,160 - 1.9
288,421 + 0.3
288,477 - -0.2
288,484 + 0.2
288,546 + 0.1
288,557 - 0.2
288,561 - -0.8
288,568 + 0.8
288,591 + -0.3
288,622 + 0.4
288,626 - 0.2
288,632 + 0.4
288,640 + -0.1
288,652 + 0.8
288,669 + 0.5
288,716 - 10553 mRNA_2185 0.19 -1.5
288,717 - 10553 mRNA_2185 0.19 -0.7
288,733 + 10553 mRNA_2185 0.30 -0.5
288,784 - 10553 mRNA_2185 0.62 0.6
288,883 - -0.2
288,891 + 0.7
288,919 + 0.2
289,047 + 1.0
289,195 - -0.5
289,201 - 0.2
289,214 + 0.6
289,220 - 0.0
289,224 - -0.5
289,334 - 0.9
289,353 - -0.2
289,354 + 0.9
289,363 + -0.7
289,368 + 0.9
289,371 + 0.3
289,375 + -0.4
289,471 - -0.6
289,473 + -0.6
289,502 - 0.6
289,625 - -0.1
289,649 + 0.9
289,810 - -0.2