Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2135

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2134: 10502 - K10660 MARCH5 E3 ubiquitin-protein ligase MARCH5, at 148859 to 150709 10502 mRNA_2135: 10503 - KOG2922 Uncharacterized conserved protein, at 150841 to 152742 10503 mRNA_2136: 10504 - K01613 psd, PISD phosphatidylserine decarboxylase, at 153030 to 154707 10504

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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149,911 + 10502 mRNA_2134 0.57 -0.5
149,913 - 10502 mRNA_2134 0.57 2.2
150,277 - 10502 mRNA_2134 0.77 -0.0
150,622 + -0.6
150,623 + 0.1
150,712 + -0.3
150,725 + 0.8
150,752 + -0.2
150,774 + 1.7
150,861 - -0.5
150,896 - 1.5
150,941 + -0.5
151,043 - 10503 mRNA_2135 0.11 1.6
151,062 - 10503 mRNA_2135 0.12 -0.2
151,089 + 10503 mRNA_2135 0.13 0.1
151,197 + 10503 mRNA_2135 0.19 2.3
151,216 + 10503 mRNA_2135 0.20 1.9
151,245 - 10503 mRNA_2135 0.21 1.3
151,478 - 10503 mRNA_2135 0.33 1.0
151,776 + 10503 mRNA_2135 0.49 1.5
151,785 - 10503 mRNA_2135 0.50 0.4
151,881 + 10503 mRNA_2135 0.55 0.1
151,979 - 10503 mRNA_2135 0.60 0.8
152,197 + 10503 mRNA_2135 0.71 0.1
152,238 - 10503 mRNA_2135 0.73 0.5
152,282 + 10503 mRNA_2135 0.76 -0.9
152,360 - 10503 mRNA_2135 0.80 0.5
152,650 + -0.1
152,654 - 0.7
152,664 - -0.2
152,690 - -0.4
152,693 + 0.6
152,700 + 2.1
152,764 + 0.7
152,808 - 0.2
153,117 - -1.7
153,269 + 10504 mRNA_2136 0.14 0.1
153,307 - 10504 mRNA_2136 0.17 0.8
153,666 - 10504 mRNA_2136 0.38 1.6
153,673 - 10504 mRNA_2136 0.38 -0.5
153,721 - 10504 mRNA_2136 0.41 -0.0