Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2133

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2132: 10500 - Hypothetical Protein, at 144026 to 145888 10500 mRNA_2133: 10501 - ProSitePatterns-Zinc finger RanBP2-type signature.-PS01358,ProSiteProfiles-Zinc finger RanBP2 type profile.-PS50199,SMART-Zinc finger domain-SM00547,SUPERFAMILY--SSF90209, at 146345 to 148532 10501 mRNA_2134: 10502 - K10660 MARCH5 E3 ubiquitin-protein ligase MARCH5, at 148859 to 150709 10502

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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145,463 - 10500 mRNA_2132 0.77 -1.1
146,535 - -1.4
147,089 + 10501 mRNA_2133 0.34 3.3
147,675 - 10501 mRNA_2133 0.61 0.4
148,118 - 10501 mRNA_2133 0.81 -1.0
148,407 + 0.4
148,501 + -0.1
148,724 - -0.1
149,400 + 10502 mRNA_2134 0.29 0.9