Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2118

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2117: 10485 - Hypothetical Protein, at 112509 to 114471 10485 mRNA_2118: 10486 - KOG0254 Predicted transporter (major facilitator superfamily), at 114569 to 117029 10486 mRNA_2119: 10487 - HMMPfam-Taurine catabolism dioxygenase TauD, TfdA family-PF02668,SUPERFAMILY--SSF51197, at 117592 to 119082 10487

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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114,004 + 10485 mRNA_2117 0.76 0.2
114,196 - 10485 mRNA_2117 0.86 -0.3
114,203 + 10485 mRNA_2117 0.86 -0.1
114,206 - 10485 mRNA_2117 0.86 -0.4
114,433 + -0.6
114,465 - -0.3
114,471 + -0.9
114,575 - -0.0
114,581 - 0.1
114,626 - -0.5
114,677 + -1.1
114,711 - -0.3
114,857 - 10486 mRNA_2118 0.12 0.1
114,893 + 10486 mRNA_2118 0.13 2.7
115,108 + 10486 mRNA_2118 0.22 1.0
115,414 + 10486 mRNA_2118 0.34 1.5
115,415 + 10486 mRNA_2118 0.34 0.2
115,489 - 10486 mRNA_2118 0.37 0.3
115,498 - 10486 mRNA_2118 0.38 1.0
115,546 + 10486 mRNA_2118 0.40 1.7
115,565 - 10486 mRNA_2118 0.40 1.1
115,609 + 10486 mRNA_2118 0.42 -0.9
116,196 + 10486 mRNA_2118 0.66 0.5
116,299 - 10486 mRNA_2118 0.70 -0.9
116,384 - 10486 mRNA_2118 0.74 0.6
116,516 + 10486 mRNA_2118 0.79 0.1
116,567 - 10486 mRNA_2118 0.81 1.0
116,790 + 0.6
116,790 + 1.6
117,160 - 0.2
117,179 + 0.5
117,179 + 0.2
117,193 + 0.4
117,193 + -0.5
117,196 + -0.1
117,239 - 1.0
117,314 - 0.6
117,319 + -0.4
117,319 + 1.9
117,338 + -0.1
117,339 - -0.2
117,341 + 0.8
117,397 + 0.8
117,458 - -0.9
117,538 - 0.2
117,541 - 0.4
117,542 - 0.6
117,565 + 2.8
117,587 - 1.6
117,588 - -1.2
117,824 - 10487 mRNA_2119 0.16 0.6
117,833 + 10487 mRNA_2119 0.16 0.0
117,863 + 10487 mRNA_2119 0.18 -0.0
117,866 - 10487 mRNA_2119 0.18 1.7
117,929 + 10487 mRNA_2119 0.23 -0.0