Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2114

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2114: 10482 - K10768 ALKBH6 alkylated DNA repair protein alkB homolog 6, at 105978 to 107393 10482 mRNA_2115: 10483 - BLAST integral membrane protein [Stemphylium lycopersici], at 107556 to 109708 10483

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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105,581 - 0.2
105,818 + -0.1
105,833 + 0.0
105,859 - 0.4
105,989 + 0.1
106,171 - 10482 mRNA_2114 0.14 -0.5
106,224 - 10482 mRNA_2114 0.17 2.0
106,233 + 10482 mRNA_2114 0.18 0.2
106,244 + 10482 mRNA_2114 0.19 0.8
106,437 - 10482 mRNA_2114 0.32 -0.7
106,645 + 10482 mRNA_2114 0.47 1.3
106,656 - 10482 mRNA_2114 0.48 -0.0
106,725 + 10482 mRNA_2114 0.53 -0.2
106,810 + 10482 mRNA_2114 0.59 1.5
106,969 + 10482 mRNA_2114 0.70 2.4
106,972 + 10482 mRNA_2114 0.70 0.8
107,095 - 10482 mRNA_2114 0.79 0.9
107,103 - 10482 mRNA_2114 0.79 1.4
107,117 + 10482 mRNA_2114 0.80 0.0
107,304 + 0.4
107,421 - 2.2
107,423 + -1.6
107,423 + 1.7
107,436 + 0.7
107,438 - 0.5
107,444 + -0.4
107,490 - 1.0
107,562 - 0.5
107,577 - 0.4
107,580 - -0.1
107,591 - -0.3
107,627 + 2.4
107,992 - 10483 mRNA_2115 0.20 -0.0
108,029 + 10483 mRNA_2115 0.22 0.0
108,040 + 10483 mRNA_2115 0.22 -0.8
108,082 + 10483 mRNA_2115 0.24 0.5
108,157 - 10483 mRNA_2115 0.28 1.1
108,176 - 10483 mRNA_2115 0.29 0.5
108,208 - 10483 mRNA_2115 0.30 1.3
108,314 + 10483 mRNA_2115 0.35 0.0