Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2083

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2083: 10451 - K06276 PDPK1 3-phosphoinositide dependent protein kinase-1, at 30266 to 34170 10451 mRNA_2084: 10452 - KOG0254 Predicted transporter (major facilitator superfamily), at 34690 to 37198 10452

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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29,512 + -1.2
29,516 - 0.4
29,525 - -0.3
29,526 + -0.1
29,530 + 0.3
29,532 - 0.4
29,535 - -1.2
29,551 - 0.8
29,700 - 0.0
29,708 + 1.0
29,710 + -0.3
29,711 + 0.5
29,738 + -0.2
29,818 - 0.7
29,851 + 0.0
29,867 + 0.5
29,886 - 0.7
30,572 - 0.2
30,587 + 0.6
30,772 - 10451 mRNA_2083 0.13 0.6
30,868 + 10451 mRNA_2083 0.15 0.6
31,268 - 10451 mRNA_2083 0.26 0.9
31,318 + 10451 mRNA_2083 0.27 1.7
31,349 - 10451 mRNA_2083 0.28 0.8
31,414 - 10451 mRNA_2083 0.29 -0.3
33,036 + 10451 mRNA_2083 0.71 -1.0
33,217 + 10451 mRNA_2083 0.76 1.0
33,221 + 10451 mRNA_2083 0.76 0.1
33,509 - 10451 mRNA_2083 0.83 0.5
33,577 - 10451 mRNA_2083 0.85 0.2
33,630 + 10451 mRNA_2083 0.86 -0.9
33,816 + 0.4
33,833 + -0.9
33,961 + 1.5
33,964 - -1.2
33,973 + 0.1
34,091 - -0.8
34,118 + 0.3
34,215 - 0.4
34,266 - 0.4
34,369 + 1.7
34,692 - 2.0
34,980 + 10452 mRNA_2084 0.12 0.0
35,015 + 10452 mRNA_2084 0.13 0.7
35,019 - 10452 mRNA_2084 0.13 1.2
35,150 + 10452 mRNA_2084 0.18 1.1