Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2061

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2060: 10428 - K05824 LYS12 homoisocitrate dehydrogenase, at 855890 to 857453 10428 mRNA_2061: 10429 - HMMPfam-Protein of unknown function (DUF1640)-PF07798, at 857800 to 859276 10429 mRNA_2062: 10430 - K06210 NMNAT nicotinamide mononucleotide adenylyltransferase, at 860040 to 861424 10430

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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857,044 + 10428 mRNA_2060 0.74 -2.1
857,100 - 10428 mRNA_2060 0.77 -1.6
857,125 - 10428 mRNA_2060 0.79 -2.5
857,222 + 10428 mRNA_2060 0.85 -2.8
857,368 - -1.7
857,393 - -2.3
857,528 - 1.5
857,667 - 2.2
857,813 - 0.2
857,815 + 1.4
857,831 + 0.1
858,388 + 10429 mRNA_2061 0.40 0.6
858,706 + 10429 mRNA_2061 0.61 1.4
859,011 + 10429 mRNA_2061 0.82 0.3
859,036 + 10429 mRNA_2061 0.84 0.2
859,284 - 0.6
859,294 + 0.5
859,426 - 0.3
859,440 - 0.0
859,444 - -1.4
859,448 + 0.5
859,580 + 1.3
859,598 + -0.6
859,717 - -0.2
859,727 - 1.3
859,727 - 1.7
859,833 - -0.4
859,880 - -0.1
859,992 - -3.1
860,009 + 0.1
860,158 + 0.3