Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2025

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2024: 10392 - K15979 SND1 staphylococcal nuclease domain-containing protein 1, at 770180 to 773514 10392 mRNA_2025: 10393 - SUPERFAMILY--SSF53474, at 773905 to 776623 10393 mRNA_2026: 10394 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 776938 to 779956 10394

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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772,947 - 10392 mRNA_2024 0.83 -0.5
773,452 - 0.6
773,518 + 0.0
773,670 - -1.3
773,672 + -1.6
773,808 - 0.7
773,832 - -1.5
773,836 - 0.8
773,843 - 1.2
773,843 + -1.3
773,850 + 0.9
773,864 - 0.8
773,981 - 0.0
773,997 + -0.4
774,001 + 0.9
774,117 - 0.6
774,121 - 3.2
774,147 + -0.3
774,263 + 10393 mRNA_2025 0.13 1.3
774,306 + 10393 mRNA_2025 0.15 -0.5
774,388 - 10393 mRNA_2025 0.18 2.1
774,416 - 10393 mRNA_2025 0.19 -0.8
774,440 - 10393 mRNA_2025 0.20 0.3
774,441 + 10393 mRNA_2025 0.20 1.3
774,441 + 10393 mRNA_2025 0.20 -0.5
774,553 - 10393 mRNA_2025 0.24 1.8
774,725 + 10393 mRNA_2025 0.30 -0.2
774,744 + 10393 mRNA_2025 0.31 0.5
774,749 + 10393 mRNA_2025 0.31 -0.2
774,862 - 10393 mRNA_2025 0.35 0.0
775,021 + 10393 mRNA_2025 0.41 0.4
775,078 - 10393 mRNA_2025 0.43 0.5
775,184 - 10393 mRNA_2025 0.47 -0.8
775,197 + 10393 mRNA_2025 0.48 0.5
775,345 - 10393 mRNA_2025 0.53 0.5
775,434 + 10393 mRNA_2025 0.56 0.4
775,709 - 10393 mRNA_2025 0.66 0.5
776,520 + 0.0
776,608 + 0.2
776,790 - 1.2
776,802 + 0.6
776,806 + -0.0
776,817 - 1.2
776,818 - -0.1
777,072 - -1.6
777,083 + -1.8
777,293 - 10394 mRNA_2026 0.12 0.5