Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2023

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2022: 10390 - BLAST KLLA0F09339p [Kluyveromyces lactis], at 766628 to 767371 10390 mRNA_2023: 10391 - K04718 SPHK sphingosine kinase, at 767575 to 770006 10391 mRNA_2024: 10392 - K15979 SND1 staphylococcal nuclease domain-containing protein 1, at 770180 to 773514 10392

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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766,710 - 10390 mRNA_2022 0.11 0.8
766,725 - 10390 mRNA_2022 0.13 -0.2
766,731 + 10390 mRNA_2022 0.14 2.3
766,850 + 10390 mRNA_2022 0.30 1.8
766,988 - 10390 mRNA_2022 0.48 -0.5
767,181 - 10390 mRNA_2022 0.74 1.2
767,274 + 10390 mRNA_2022 0.87 0.4
767,415 - 0.5
767,538 - 0.0
767,710 - -1.1
767,753 + 2.0
768,148 + 10391 mRNA_2023 0.24 -0.2
768,576 - 10391 mRNA_2023 0.41 -0.2
768,625 + 10391 mRNA_2023 0.43 0.7
768,750 - 10391 mRNA_2023 0.48 0.2
769,041 - 10391 mRNA_2023 0.60 0.5
769,116 - 10391 mRNA_2023 0.63 1.2
769,267 + 10391 mRNA_2023 0.70 -1.3
769,452 - 10391 mRNA_2023 0.77 1.6
769,752 + 10391 mRNA_2023 0.90 2.1
769,860 - -1.0
770,012 - 1.2
770,015 - -1.2
770,024 + 0.5
770,032 - 1.1
770,033 + 0.9
770,052 + 0.4
770,052 + -0.5
770,177 - 0.9
770,184 + -1.8
770,187 - 0.7
770,464 - 1.2
770,745 - 10392 mRNA_2024 0.17 -0.2
770,908 - 10392 mRNA_2024 0.22 0.5