Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2019

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2018: 10386 - K09554 CDC37 cell division cycle protein 37, at 758563 to 760344 10386 mRNA_2019: 10387 - K07088 K07088 uncharacterized protein, at 760625 to 762571 10387 mRNA_2020: 10388 - KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins, at 762718 to 765022 10388

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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760,213 + -0.2
760,363 - -0.7
760,379 + -0.9
760,382 - 1.5
760,472 - 0.4
760,504 - -1.0
760,514 - -0.1
760,966 + 10387 mRNA_2019 0.18 -0.9
761,131 - 10387 mRNA_2019 0.26 1.4
761,179 - 10387 mRNA_2019 0.28 1.4
761,319 - 10387 mRNA_2019 0.36 1.2
761,581 + 10387 mRNA_2019 0.49 -0.2
762,049 + 10387 mRNA_2019 0.73 -0.7
762,168 + 10387 mRNA_2019 0.79 -2.1
762,183 - 10387 mRNA_2019 0.80 0.6
762,185 + 10387 mRNA_2019 0.80 -0.2
762,552 - 1.2
762,590 + -0.3
762,814 + 1.3
762,874 + 1.2
762,942 - 1.3
762,985 + 10388 mRNA_2020 0.12 0.3
763,128 - 10388 mRNA_2020 0.18 0.2
763,475 - 10388 mRNA_2020 0.33 0.1