Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2017

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2016: 10384 - HMMPfam-Glycosyl transferase family group 2-PF13632,SUPERFAMILY--SSF53448, at 748205 to 751738 10384 mRNA_2017: 10385 - K12600 SKI3, TTC37 superkiller protein 3, at 752495 to 757859 10385 mRNA_2018: 10386 - K09554 CDC37 cell division cycle protein 37, at 758563 to 760344 10386

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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751,596 + -0.0
751,605 + -0.3
751,657 - -1.1
751,683 - -0.5
751,785 + 1.0
751,962 - -0.5
752,039 - 0.2
752,134 + 0.5
752,208 - 0.7
752,333 + 0.6
752,351 - 0.3
752,371 - 3.2
752,533 + 2.1
752,558 - -0.1
752,621 - 0.1
752,704 + 1.3
752,729 + 0.3
752,820 - 1.5
752,823 - -0.1
753,529 - 10385 mRNA_2017 0.19 -0.0
754,120 + 10385 mRNA_2017 0.30 -0.2
755,345 - 10385 mRNA_2017 0.53 -0.7
755,454 - 10385 mRNA_2017 0.55 -0.3
755,720 + 10385 mRNA_2017 0.60 1.3
755,844 - 10385 mRNA_2017 0.62 0.8
756,220 - 10385 mRNA_2017 0.69 1.9
756,227 + 10385 mRNA_2017 0.70 0.2
757,759 + 1.9
757,816 - 0.8
757,879 + -0.1
757,883 - 1.2
757,911 + 0.9
758,042 - 1.0
758,055 + 0.1
758,187 + -0.4
758,196 + 0.8
758,205 - 2.4
758,214 + 0.7
758,335 - 1.0