Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2010

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2009: 10377 - BLAST ankyrin [Cenococcum geophilum 1.58], at 733101 to 734076 10377 mRNA_2010: 10378 - KOG2533 Permease of the major facilitator superfamily, at 734428 to 736399 10378 mRNA_2011: 10379 - KOG2533 Permease of the major facilitator superfamily, at 737348 to 740033 10379

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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733,634 + 10377 mRNA_2009 0.55 -0.7
733,681 - 10377 mRNA_2009 0.59 -0.3
733,788 - 10377 mRNA_2009 0.70 -0.0
734,465 - 0.5
734,623 - -0.4
734,692 - 10378 mRNA_2010 0.13 0.7
735,394 + 10378 mRNA_2010 0.49 -1.0
735,534 - 10378 mRNA_2010 0.56 -0.3
735,695 + 10378 mRNA_2010 0.64 -0.2
735,827 - 10378 mRNA_2010 0.71 1.4
735,956 + 10378 mRNA_2010 0.77 0.1
736,290 - -0.1
736,663 + 2.0
736,849 + 1.0
737,118 - 1.9
737,121 + 1.8
737,235 + 0.2