Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1988

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1987: 10355 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 677107 to 679198 10355 mRNA_1988: 10356 - KOG1674 Cyclin, at 679258 to 681059 10356

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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678,779 - 10355 mRNA_1987 0.80 -0.9
678,981 - 10355 mRNA_1987 0.90 2.0
679,171 + 1.4
679,198 + -0.1
679,209 + 0.1
679,414 - 0.6
679,455 - 10356 mRNA_1988 0.11 1.3
679,691 + 10356 mRNA_1988 0.24 1.1
679,760 - 10356 mRNA_1988 0.28 0.8
679,773 - 10356 mRNA_1988 0.29 0.6
679,997 + 10356 mRNA_1988 0.41 -0.9
680,108 - 10356 mRNA_1988 0.47 0.7
680,124 - 10356 mRNA_1988 0.48 -0.2
680,131 + 10356 mRNA_1988 0.48 -0.5
680,198 + 10356 mRNA_1988 0.52 1.0
680,926 - -0.3
681,517 + 1.1
681,800 + 0.1
681,822 - 0.1
681,822 - -0.8
681,908 + 1.7
681,952 - -1.5
681,982 + 0.0
681,987 + -0.5
681,989 + 1.6