Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1967

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1966: 10334 - K09522 DNAJC2 DnaJ homolog subfamily C member 2, at 628186 to 629960 10334 mRNA_1967: 10335 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 630264 to 633467 10335 mRNA_1968: 10336 - HMMPfam-Membrane bound O-acyl transferase family-PF13813, at 633859 to 635339 10336

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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629,991 - 0.3
630,281 + -0.2
630,428 - -0.3
630,568 - -0.3
630,852 - 10335 mRNA_1967 0.18 0.5
631,014 + 10335 mRNA_1967 0.23 1.1
631,031 + 10335 mRNA_1967 0.24 -0.6
631,163 + 10335 mRNA_1967 0.28 -1.6
631,295 + 10335 mRNA_1967 0.32 -0.5
631,316 + 10335 mRNA_1967 0.33 0.9
631,439 + 10335 mRNA_1967 0.37 -0.2
631,453 + 10335 mRNA_1967 0.37 1.2
631,456 - 10335 mRNA_1967 0.37 4.3
631,737 + 10335 mRNA_1967 0.46 -0.1
631,874 + 10335 mRNA_1967 0.50 1.7
631,962 - 10335 mRNA_1967 0.53 0.1
632,028 - 10335 mRNA_1967 0.55 0.7
632,042 - 10335 mRNA_1967 0.55 0.5
632,197 + 10335 mRNA_1967 0.60 -0.5
632,334 + 10335 mRNA_1967 0.65 -1.6
632,495 - 10335 mRNA_1967 0.70 0.2
632,778 - 10335 mRNA_1967 0.78 0.5
632,925 - 10335 mRNA_1967 0.83 -0.3
633,526 - 0.4
633,532 + 0.8
633,533 + -0.5
633,673 + 0.6
633,684 + 0.3
633,707 + -0.5
633,715 + 2.2
633,763 - 3.2
633,807 + -0.6
633,825 - 0.1
633,831 + -0.5
633,833 + 1.3
633,834 - 2.1
633,835 - 0.4
633,841 - -0.0
633,964 + 0.7
633,978 + 0.3
634,008 - 10336 mRNA_1968 0.10 -0.1
634,091 + 10336 mRNA_1968 0.16 1.3