Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1963

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1962: 10330 - K00133 asd aspartate-semialdehyde dehydrogenase, at 617594 to 618818 10330 mRNA_1963: 10331 - K00767 nadC, QPRT nicotinate-nucleotide pyrophosphorylase (carboxylating), at 619421 to 620670 10331 mRNA_1964: 10332 - K01495 GCH1, folE GTP cyclohydrolase I, at 621166 to 622157 10332

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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619,005 + -0.2
619,060 - 1.4
619,174 + 1.2
619,181 - 0.1
619,181 - -0.8
619,183 - -1.1
619,185 - 0.4
619,191 - 1.2
619,208 + -0.2
619,209 + 0.6
619,373 + 1.0
619,396 - -0.2
619,497 - -0.2
619,497 + -0.4
619,500 + -1.1
619,504 - -2.0
619,799 - 10331 mRNA_1963 0.30 -0.9
619,830 + 10331 mRNA_1963 0.33 -1.7
619,944 + 10331 mRNA_1963 0.42 -0.8
620,201 + 10331 mRNA_1963 0.62 0.4
620,215 - 10331 mRNA_1963 0.64 -3.3
620,230 + 10331 mRNA_1963 0.65 -1.7
620,372 - 10331 mRNA_1963 0.76 -2.3
620,377 + 10331 mRNA_1963 0.76 -1.5
620,389 + 10331 mRNA_1963 0.77 -1.7
620,470 - 10331 mRNA_1963 0.84 -2.3
620,499 - 10331 mRNA_1963 0.86 -0.2
620,649 + -4.2
620,801 - 0.1
620,802 + -0.9
620,946 + -1.5
620,960 - 2.0
621,070 + 0.2