Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1956

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1956: 10324 - BLAST 40S ribosomal protein S1 [Exophiala sideris], at 606971 to 607614 10324 mRNA_1957: 10325 - K02984 RP-S3Ae, RPS3A small subunit ribosomal protein S3Ae, at 607981 to 609583 10325

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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606,122 + -1.4
606,243 - -0.7
606,372 + 2.7
606,388 - -0.7
606,407 + 0.7
606,410 + 2.0
606,541 + 1.1
606,542 + 0.7
606,542 - 0.5
606,551 - -1.0
606,594 + 1.4
606,680 - -0.3
606,704 - 0.1
606,710 + 2.3
606,996 - 0.2
607,303 + 10324 mRNA_1956 0.52 -0.4
607,305 + 10324 mRNA_1956 0.52 -0.3
607,373 - 10324 mRNA_1956 0.62 1.8
607,470 - 10324 mRNA_1956 0.77 1.8
607,473 + 10324 mRNA_1956 0.78 1.0
607,616 - -0.1
607,686 + -0.1
607,773 - -1.4
607,789 - 2.7
607,790 - 0.7
607,884 - -1.0
607,903 - -1.1
607,905 - 2.5
607,907 - 0.4