Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1947

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1946: 10314 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 575124 to 577080 10314 mRNA_1947: 10315 - K14864 FTSJ1, TRM7 tRNA (cytidine32/guanosine34-2'-O)-methyltransferase, at 577345 to 578684 10315

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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576,687 + 10314 mRNA_1946 0.80 -0.1
576,826 - 10314 mRNA_1946 0.87 1.9
576,969 + -0.1
576,995 + 1.3
577,010 + 1.2
577,038 - 2.1
577,122 - 0.9
577,176 + 0.5
577,437 + 0.4
577,444 + 0.5
577,548 - 10315 mRNA_1947 0.15 -0.0
577,836 - 10315 mRNA_1947 0.37 1.4
577,838 + 10315 mRNA_1947 0.37 -1.0
577,851 - 10315 mRNA_1947 0.38 1.7
577,987 - 10315 mRNA_1947 0.48 -0.4
578,429 - 10315 mRNA_1947 0.81 2.2
578,583 + -1.0
578,731 + 0.2
578,747 + 0.1
578,751 + 0.1
578,760 - -0.1
578,780 + 0.3
578,903 - 1.6
579,117 - 0.3
579,452 - -0.6
579,452 - 1.8
579,482 + 0.2
579,539 - -0.3
579,593 + 0.2
579,609 + 0.7
579,661 + 0.2