Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1940

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1939: 10307 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 558580 to 560603 10307 mRNA_1940: 10308 - K00276 AOC3, AOC2, tynA primary-amine oxidase, at 561164 to 563777 10308 mRNA_1941: 10309 - KOG3798 Predicted Zn-dependent hydrolase (beta-lactamase superfamily), at 564207 to 567007 10309

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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560,181 + 10307 mRNA_1939 0.79 0.2
560,236 - 10307 mRNA_1939 0.82 0.3
560,531 - -0.3
560,666 - 0.3
560,684 + -0.7
560,688 - 0.2
560,696 + -2.1
560,716 + 0.5
560,720 + 1.4
560,726 + 1.4
560,727 - 0.1
560,747 - 0.4
560,756 - 0.9
560,781 + -1.4
560,798 - 0.0
560,817 + 0.3
560,826 + -0.3
560,827 - -0.2
560,836 - -0.3
560,840 + 0.2
560,850 + 0.4
560,852 - 0.6
560,864 + -0.7
560,864 - -0.3
560,986 - 1.8
560,990 - -0.3
560,991 + -0.6
560,996 - -0.5
560,997 - 1.0
561,002 + 1.2
561,002 - 1.4
561,009 + 0.3
561,011 + -0.3
561,011 + 3.6
561,014 - 0.1
561,024 - 1.4
561,026 + 0.1
561,030 + -0.1
561,031 + 0.7
561,034 + 0.5
561,059 + 0.1
561,059 - -4.3
561,065 + -0.0
561,067 - -0.2
561,068 + -0.4
561,075 - -0.2
561,076 + 0.2
561,077 + 1.2
561,081 - 0.6
561,083 + 0.6
561,089 - -0.0
561,091 + 1.2
561,093 + -0.4
561,093 + -1.3
561,095 - -1.1
561,098 + -0.3
561,104 + 0.2
561,104 + -0.9
561,106 + 1.9
561,208 + 2.0
561,227 - -1.6
561,232 + 0.3
561,243 - -0.9
561,244 + -0.4
561,339 + 0.5
561,519 - 10308 mRNA_1940 0.14 -1.3
561,592 - 10308 mRNA_1940 0.16 0.1
561,681 - 10308 mRNA_1940 0.20 -0.1
561,684 + 10308 mRNA_1940 0.20 0.0
562,384 + 10308 mRNA_1940 0.47 0.6
562,417 - 10308 mRNA_1940 0.48 -0.7
562,543 - 10308 mRNA_1940 0.53 1.2
562,568 + 10308 mRNA_1940 0.54 -0.2
562,657 + 10308 mRNA_1940 0.57 -0.0
562,687 - 10308 mRNA_1940 0.58 1.6
562,856 + 10308 mRNA_1940 0.65 -0.8
563,001 - 10308 mRNA_1940 0.70 -0.6
563,014 - 10308 mRNA_1940 0.71 1.6
563,280 - 10308 mRNA_1940 0.81 0.4
563,293 + 10308 mRNA_1940 0.81 1.1
563,561 - 1.0
563,640 + -2.1
563,755 + 0.3
563,848 - 0.3
563,870 + -0.1
563,886 + 2.7
563,888 - 1.8
563,897 + 1.2
563,905 + 2.6
563,905 - 0.2
563,909 - 2.9
563,909 + -0.2
563,915 - 0.4
564,040 - 0.0
564,043 + -0.1
564,048 - 1.5
564,070 + 0.8
564,205 + 0.3
564,206 - -0.9
564,372 + 0.1
564,375 + -1.1