Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1926

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1925: 10293 - K13239 PECI peroxisomal 3,2-trans-enoyl-CoA isomerase, at 523662 to 525143 10293 mRNA_1926: 10294 - HMMPfam-GDSL-like Lipase/Acylhydrolase family-PF13472,SUPERFAMILY--SSF52266, at 525365 to 527827 10294 mRNA_1927: 10295 - K19691 NIK1, TCSC osomolarity two-component system, sensor histidine kinase NIK1, at 528400 to 533209 10295

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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524,589 + 10293 mRNA_1925 0.63 1.0
524,806 + 10293 mRNA_1925 0.77 0.1
524,885 - 10293 mRNA_1925 0.83 -0.2
525,056 - 0.6
525,189 - -0.1
525,191 + 0.2
525,205 + -0.6
525,209 - 0.6
525,217 - 0.6
525,218 - 2.1
525,219 - 0.3
525,222 - 0.1
525,227 + -0.1
525,230 - 1.5
525,232 + 0.6
525,245 - -0.2
525,245 + -0.0
525,256 + -0.9
525,260 + 0.8
525,266 + -0.0
525,267 + 0.8
525,272 + 2.4
525,272 - -0.3
525,280 - -0.2
525,297 + -0.8
525,298 - 1.3
525,322 + 1.9
525,414 + 1.1
525,871 - 10294 mRNA_1926 0.21 -0.2
526,345 - 10294 mRNA_1926 0.40 -0.7
526,544 - 10294 mRNA_1926 0.48 -2.0
526,551 + 10294 mRNA_1926 0.48 2.0
526,743 + 10294 mRNA_1926 0.56 0.1
527,414 + 10294 mRNA_1926 0.83 1.6
527,439 + 10294 mRNA_1926 0.84 1.0
527,441 - 10294 mRNA_1926 0.84 1.2
527,463 + 10294 mRNA_1926 0.85 0.2
527,611 - 0.3
527,732 + 0.4
527,735 - -0.2
527,742 + -0.0
527,838 - -0.0
527,851 - 0.9
527,865 - 1.3
527,869 - 0.5
527,889 - 1.4
527,894 + 0.1
527,942 - 1.9
527,945 - 0.6
528,044 - 2.1
528,070 - -0.0
528,086 + 1.2
528,349 - 0.8
528,500 + -0.0
528,597 + -0.3
528,642 - 0.7