Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1897

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1896: 10264 - K00844 HK hexokinase, at 456239 to 458071 10264 mRNA_1897: 10265 - K07443 ybaZ methylated-DNA-protein-cysteine methyltransferase related protein, at 458444 to 459156 10265 mRNA_1898: 10266 - K09422 MYBP myb proto-oncogene protein, plant, at 459751 to 462341 10266

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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457,742 + 10264 mRNA_1896 0.82 0.7
457,782 + 10264 mRNA_1896 0.84 -2.6
457,872 + 10264 mRNA_1896 0.89 -0.9
457,906 + -2.0
458,030 - -0.6
458,032 - -0.8
458,043 - -2.3
458,044 + 1.1
458,046 + 0.7
458,047 + 0.3
458,120 + 2.4
458,122 - 0.7
458,140 - 0.9
458,175 - 1.6
458,238 + -1.2
458,250 - 0.3
458,254 - -1.1
458,257 + 1.6
458,266 + -0.3
458,294 - 0.3
458,341 + 0.9
458,343 + 0.2
458,458 - 0.6
458,459 + 0.0
458,466 - -0.3
458,483 - -0.9
458,529 - 10265 mRNA_1897 0.12 0.9
458,602 + 10265 mRNA_1897 0.22 0.3
458,676 + 10265 mRNA_1897 0.33 2.3
458,851 + 10265 mRNA_1897 0.57 -1.8
458,873 - 10265 mRNA_1897 0.60 0.2
458,879 - 10265 mRNA_1897 0.61 -0.4
458,887 + 10265 mRNA_1897 0.62 0.3
458,887 - 10265 mRNA_1897 0.62 2.0
458,900 - 10265 mRNA_1897 0.64 0.2
458,912 - 10265 mRNA_1897 0.66 -0.5
458,918 - 10265 mRNA_1897 0.66 0.1
458,923 - 10265 mRNA_1897 0.67 1.3
458,946 + 10265 mRNA_1897 0.70 0.7
458,950 - 10265 mRNA_1897 0.71 1.0
458,975 - 10265 mRNA_1897 0.74 -0.8
459,090 - -1.2
459,100 - 1.7
459,110 + -1.3
459,204 - -1.1
459,211 + 1.6
459,212 + 0.8
459,218 - -0.2
459,222 + 1.4
459,226 - 0.9
459,233 - 0.7
459,236 - 0.1
459,238 - 1.1
459,254 - 0.4
459,260 + -1.3
459,265 + 1.3
459,275 - 0.8
459,276 - -1.0
459,278 + -0.0
459,298 - 1.5
459,300 - 0.1
459,302 - 1.8
459,319 + -0.4
459,325 + 0.2
459,326 + 0.7
459,330 - -1.0
459,330 + -2.0
459,332 + -0.7
459,345 + 0.1
459,356 - -1.0
459,365 + 1.0
459,365 - -0.8
459,365 - -0.0
459,383 + 1.0
459,391 - 0.6
459,394 + 1.9
459,399 + -0.1
459,399 - -0.3
459,401 - 0.6
459,402 - -0.6
459,420 + -0.6
459,506 - 1.2
459,511 - 0.3
459,526 - 0.8
459,526 - 1.7
459,533 + -0.5
459,541 + 0.0
459,545 - 1.2
459,674 + -0.1
459,711 + 1.7
459,821 - -1.8