Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1846

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1845: 10213 - K06127 COQ5 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, at 355986 to 356917 10213 mRNA_1846: 10214 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 357162 to 359735 10214 mRNA_1847: 10215 - BLAST GDP-fucose protein O-fucosyltransferase [Rhizopogon v..., at 360311 to 362309 10215

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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356,934 - 0.8
357,121 - 1.2
357,148 - 0.8
357,384 - 0.1
357,728 + 10214 mRNA_1846 0.22 -0.8
357,999 + 10214 mRNA_1846 0.33 -1.5
358,010 + 10214 mRNA_1846 0.33 0.7
358,138 - 10214 mRNA_1846 0.38 -1.1
358,448 + 10214 mRNA_1846 0.50 -0.8
358,457 - 10214 mRNA_1846 0.50 0.2
358,713 - 10214 mRNA_1846 0.60 0.1
358,721 - 10214 mRNA_1846 0.61 1.8
358,731 + 10214 mRNA_1846 0.61 -0.4
358,735 + 10214 mRNA_1846 0.61 1.6
358,882 - 10214 mRNA_1846 0.67 1.7
359,021 - 10214 mRNA_1846 0.72 0.4
359,022 + 10214 mRNA_1846 0.72 -0.9
359,168 + 10214 mRNA_1846 0.78 0.1
359,459 + 10214 mRNA_1846 0.89 -0.0
359,471 - 10214 mRNA_1846 0.90 -1.3
359,473 + 10214 mRNA_1846 0.90 1.1
359,492 + -0.4
359,503 + 1.0
359,595 - 0.7
359,598 + -0.4
359,606 + -0.9
359,609 - -0.0
359,624 + -1.5
359,731 - -0.2
359,759 - 0.6
359,776 + -1.1
359,781 - -1.6
359,786 + 1.1
359,788 + 0.2
359,902 + 2.2
359,902 - -0.2
359,909 + -1.1
359,912 + 1.8
359,915 + -0.8
359,954 + 2.2
359,961 - 0.3
360,001 + 0.4
360,003 - 1.0
360,003 + -0.0
360,022 - 0.6
360,032 + 1.4
360,047 + -0.2
360,051 + 1.5
360,057 - 0.2
360,060 + 0.6
360,070 - -0.7
360,071 + -1.7
360,073 + 0.0
360,077 + -0.8
360,087 + 0.2
360,093 - -0.5
360,093 + 0.5
360,105 + 0.8
360,105 + -0.0
360,115 - 0.1
360,132 + 1.4
360,135 - 0.1
360,140 - 0.9
360,147 + -0.0
360,148 - -0.8
360,148 - 1.6
360,148 - -0.1
360,149 + 0.3
360,150 - -0.3
360,151 + -0.6
360,151 + 0.4
360,156 + 0.5
360,156 + -1.0
360,157 + 0.3
360,160 - -0.2
360,160 + 0.3
360,161 - -1.5
360,161 + 0.6
360,161 - 1.1
360,165 + 1.8
360,168 + -0.2
360,171 + 3.1
360,175 + 0.6
360,175 + -0.5
360,177 + 0.5
360,177 + 0.8
360,181 - -0.5
360,181 - -1.0
360,186 - -0.1
360,187 + 0.6
360,192 - -0.7
360,199 - 1.0
360,201 + 1.6
360,203 - 0.7
360,203 + -0.2
360,203 - -0.1
360,204 - 0.3
360,204 + 0.7
360,204 + -0.9
360,205 - 0.6
360,213 - 0.7
360,224 - -2.1
360,232 - 0.7
360,233 + -0.0
360,237 + 1.2
360,241 + 3.2
360,241 + 2.5
360,242 + 0.4
360,242 - 1.2
360,243 - -1.1
360,244 - 1.0
360,244 - 0.1
360,246 + -0.4
360,246 + 0.0
360,246 + -0.2
360,249 + 0.2
360,249 - 1.7
360,251 + -2.0
360,251 + 0.0
360,252 + -3.0
360,254 - 0.2
360,256 + -0.3
360,260 + -1.6
360,260 - -0.0
360,263 + 1.7
360,264 - 2.2
360,265 + 0.9
360,267 - 1.9
360,268 + -0.4
360,268 + -0.1
360,268 + -0.2
360,268 + 1.3
360,269 + 0.1
360,269 - 1.4
360,272 - 0.9
360,274 - -0.2
360,276 - -0.2
360,277 - -0.2
360,280 - -0.8
360,285 - 0.7
360,290 + 1.2
360,304 + 0.2
360,417 - -0.2
360,431 - -0.6
360,442 + -1.5
360,558 + 10215 mRNA_1847 0.12 -0.2
360,691 - 10215 mRNA_1847 0.19 -0.5