Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1842

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1841: 10209 - KOG4476 Gluconate transport-inducing protein, at 342756 to 344236 10209 mRNA_1842: 10210 - K08660 CNDP2 cytosolic nonspecific dipeptidase, at 344816 to 347199 10210 mRNA_1843: 10211 - Hypothetical Protein, at 347522 to 353659 10211

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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344,164 - -0.3
344,262 - -2.0
344,331 - 0.6
344,560 - -0.1
344,567 + -2.6
344,583 - 1.2
344,590 - 1.8
344,610 - 1.5
344,643 - 0.3
344,653 + 0.2
344,691 + 0.2
344,693 - -0.8
344,704 + 0.4
344,704 - -0.6
344,727 + -0.6
344,748 + 0.7
344,863 - -2.0
345,015 + 1.9
345,034 - -1.0
345,303 + 10210 mRNA_1842 0.20 0.6
345,453 - 10210 mRNA_1842 0.27 -0.5
345,470 + 10210 mRNA_1842 0.27 2.5
345,757 - 10210 mRNA_1842 0.39 -0.1
345,773 + 10210 mRNA_1842 0.40 0.4
345,902 + 10210 mRNA_1842 0.46 0.6
346,184 - 10210 mRNA_1842 0.57 2.6
346,774 + 10210 mRNA_1842 0.82 0.1
346,782 - 10210 mRNA_1842 0.82 -0.0
346,910 - 10210 mRNA_1842 0.88 -0.8
346,921 + 10210 mRNA_1842 0.88 0.0
346,924 - 10210 mRNA_1842 0.88 0.6
347,075 + 0.9
347,187 - -0.7
347,214 + 0.8
347,335 + -0.1
347,346 - -1.3
347,361 - -0.4
347,363 - 0.5
347,365 + -1.2
347,371 - 1.6
347,401 - 1.8
347,515 + 1.1
347,525 + -0.3
347,529 - 1.3
347,676 - -0.5
347,794 - 0.6
347,806 + 0.9
347,832 + 1.1
347,836 + 0.5
347,949 - 0.2
347,955 + -1.0