Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1837

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1836: 10204 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF103657,SUPERFAMILY--SSF50729, at 329163 to 331495 10204 mRNA_1837: 10205 - K00281 GLDC, gcvP glycine dehydrogenase, at 331991 to 335971 10205 mRNA_1838: 10206 - K04486 E3.1.3.15B histidinol-phosphatase (PHP family), at 336405 to 337627 10206

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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331,610 + -1.0
331,748 - -0.4
331,855 + -0.2
331,862 - -0.8
331,868 - 0.8
331,878 + 0.1
331,903 + 2.1
331,988 - -0.1
332,007 - -0.8
332,013 - 0.1
332,014 - 0.1
332,014 + 0.0
332,014 + -0.4
332,014 - -0.9
332,015 + 0.6
332,039 + -0.3
332,055 + 1.6
332,174 - 1.4
332,315 + -2.1
332,343 + -0.8
332,475 - 10205 mRNA_1837 0.12 1.2
332,785 + 10205 mRNA_1837 0.20 2.3
332,788 + 10205 mRNA_1837 0.20 -0.4
334,071 - 10205 mRNA_1837 0.52 1.0
334,090 + 10205 mRNA_1837 0.53 1.9
334,096 + 10205 mRNA_1837 0.53 1.0
334,309 + 10205 mRNA_1837 0.58 -1.2
334,589 + 10205 mRNA_1837 0.65 -0.1
334,665 + 10205 mRNA_1837 0.67 -0.3
334,819 - 10205 mRNA_1837 0.71 0.1
335,576 - -1.0
335,583 + -0.9
335,714 + -0.5
335,879 - 1.6
336,115 + 1.3
336,144 + 0.3
336,153 + 0.9
336,183 - -0.2
336,314 - 1.4
336,324 - 1.9
336,332 + -0.3
336,472 - -2.8