Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1820

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1819: 10187 - K09215 OSR, ODD odd-skipped, at 287876 to 290451 10187 mRNA_1820: 10188 - Hypothetical Protein, at 290979 to 291681 10188 mRNA_1821: 10189 - HMMPfam-Domain of unknown function (DUF2427)-PF10348,HMMPfam-Protein of unknown function (Ytp1)-PF10355, at 291714 to 294112 10189

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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290,007 - 10187 mRNA_1819 0.83 0.7
290,340 + 1.1
290,518 - 0.9
290,661 - 0.2
290,665 - -0.6
290,806 + -1.4
290,952 - 1.8
291,258 - 10188 mRNA_1820 0.40 2.4
291,269 - 10188 mRNA_1820 0.41 1.1
291,271 - 10188 mRNA_1820 0.42 1.7
291,275 - 10188 mRNA_1820 0.42 0.9
291,276 - 10188 mRNA_1820 0.42 0.6
291,278 + 10188 mRNA_1820 0.43 1.4
291,281 - 10188 mRNA_1820 0.43 0.6
291,283 + 10188 mRNA_1820 0.43 0.1
291,283 - 10188 mRNA_1820 0.43 0.8
291,289 + 10188 mRNA_1820 0.44 0.9
291,289 + 10188 mRNA_1820 0.44 1.4
291,290 - 10188 mRNA_1820 0.44 0.5
291,297 + 10188 mRNA_1820 0.45 -0.4
291,299 + 10188 mRNA_1820 0.46 -0.6
291,300 - 10188 mRNA_1820 0.46 0.2
291,317 - 10188 mRNA_1820 0.48 -1.4
291,349 + 10188 mRNA_1820 0.53 2.7
291,352 - 10188 mRNA_1820 0.53 0.7
291,358 - 10188 mRNA_1820 0.54 0.3
291,370 + 10188 mRNA_1820 0.56 -1.7
291,371 + 10188 mRNA_1820 0.56 -0.4
291,416 - 10188 mRNA_1820 0.62 -0.1
291,416 + 10188 mRNA_1820 0.62 0.0
291,437 + 10188 mRNA_1820 0.65 1.6
291,438 + 10188 mRNA_1820 0.65 0.1
291,520 + 10188 mRNA_1820 0.77 2.2
291,552 - 10188 mRNA_1820 0.82 0.5
291,557 - 10188 mRNA_1820 0.82 2.3
291,581 + 10188 mRNA_1820 0.86 1.0
291,582 - 10188 mRNA_1820 0.86 -0.0
291,587 + 10188 mRNA_1820 0.86 0.3
291,596 + 10188 mRNA_1820 0.88 0.2
291,601 + 10188 mRNA_1820 0.88 -0.0
291,620 - 0.3
291,762 - 1.4
291,781 - 0.9
291,799 - 0.8
291,933 - 1.2
291,962 - 10189 mRNA_1821 0.10 1.1
292,036 - 10189 mRNA_1821 0.13 0.7
292,042 - 10189 mRNA_1821 0.14 0.2
292,049 + 10189 mRNA_1821 0.14 0.8
292,064 - 10189 mRNA_1821 0.15 1.9
292,222 - 10189 mRNA_1821 0.21 0.3
292,240 + 10189 mRNA_1821 0.22 0.6
292,380 - 10189 mRNA_1821 0.28 0.2
292,403 - 10189 mRNA_1821 0.29 1.8
292,501 - 10189 mRNA_1821 0.33 2.0