Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1769

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1768: 10136 - K01858 INO1, ISYNA1 myo-inositol-1-phosphate synthase, at 156346 to 158351 10136 mRNA_1769: 10137 - Interpro F-box-like 0, at 159108 to 161176 10137 mRNA_1770: 10138 - HMMPfam-F-box-like-PF12937, at 161532 to 163380 10138

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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158,117 + 10136 mRNA_1768 0.88 0.3
158,121 - 10136 mRNA_1768 0.88 0.1
158,230 - 1.1
158,550 + 0.3
158,554 + 0.2
158,571 + -0.1
158,585 + 0.2
158,671 + 0.2
158,704 - 0.1
158,711 - 2.3
158,724 - 0.3
158,736 - -0.1
158,738 + 1.3
158,741 + 0.2
158,758 + -0.8
158,834 - 2.8
158,845 - -0.1
158,856 + 1.1
158,859 - 0.6
158,867 - 0.3
158,867 + 0.1
158,875 + -0.5
158,879 - -0.5
158,879 + 0.8
158,900 + -0.3
158,901 - 0.7
158,914 + 1.4
158,915 - -0.4
158,976 - -0.1
158,981 + 0.1
158,982 - 0.3
158,987 + 0.7
158,988 - -0.6
158,992 - 0.3
158,995 + 0.2
158,999 + 0.2
159,001 - 0.5
159,010 - -0.5
159,011 + -1.4
159,017 + 0.7
159,022 + 0.8
159,036 + -2.3
159,036 + -0.3
159,042 + -0.1
159,055 + 0.0
159,183 - 1.1
159,225 + 3.1
159,329 - 10137 mRNA_1769 0.11 0.5
159,339 - 10137 mRNA_1769 0.11 -0.7
159,348 + 10137 mRNA_1769 0.12 -0.6
159,449 - 10137 mRNA_1769 0.16 0.6
159,456 + 10137 mRNA_1769 0.17 -1.1
159,509 - 10137 mRNA_1769 0.19 2.6
159,511 + 10137 mRNA_1769 0.19 0.7
159,516 - 10137 mRNA_1769 0.20 0.1
159,528 + 10137 mRNA_1769 0.20 0.2
159,544 + 10137 mRNA_1769 0.21 -0.1
159,572 + 10137 mRNA_1769 0.22 0.1
159,589 - 10137 mRNA_1769 0.23 0.3
159,630 - 10137 mRNA_1769 0.25 1.4
159,646 + 10137 mRNA_1769 0.26 0.2
159,660 - 10137 mRNA_1769 0.27 -0.0
159,660 - 10137 mRNA_1769 0.27 0.0
159,715 - 10137 mRNA_1769 0.29 1.0
159,720 + 10137 mRNA_1769 0.30 -0.6
159,735 - 10137 mRNA_1769 0.30 0.2
159,754 + 10137 mRNA_1769 0.31 1.1
159,927 + 10137 mRNA_1769 0.40 2.0
159,927 + 10137 mRNA_1769 0.40 -0.5
160,143 + 10137 mRNA_1769 0.50 0.2
160,204 + 10137 mRNA_1769 0.53 0.3
160,209 + 10137 mRNA_1769 0.53 -0.1
160,219 + 10137 mRNA_1769 0.54 0.3
160,222 - 10137 mRNA_1769 0.54 0.1
160,548 - 10137 mRNA_1769 0.70 -0.3
160,594 - 10137 mRNA_1769 0.72 1.0
160,813 - 10137 mRNA_1769 0.82 1.3
160,821 + 10137 mRNA_1769 0.83 2.7
161,141 - 0.3