Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1760

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1759: 10127 - K13345 PEX12, PAF3 peroxin-12, at 132751 to 134282 10127 mRNA_1760: 10128 - KOG0940 Ubiquitin protein ligase RSP5/NEDD4, at 134712 to 138303 10128

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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134,295 - 2.8
134,307 + -0.4
134,324 + 0.8
134,613 - -1.4
134,614 + 0.9
135,502 - 10128 mRNA_1760 0.22 -0.3
135,595 + 10128 mRNA_1760 0.25 2.3
136,053 + 10128 mRNA_1760 0.37 0.4
136,230 - 10128 mRNA_1760 0.42 0.3
136,319 - 10128 mRNA_1760 0.45 1.8
136,410 - 10128 mRNA_1760 0.47 0.1
137,315 + 10128 mRNA_1760 0.72 0.5
137,483 - 10128 mRNA_1760 0.77 -0.4
137,671 + 10128 mRNA_1760 0.82 0.4
137,926 - 10128 mRNA_1760 0.89 0.9
138,063 - -0.1
138,069 - -0.5
138,073 - 0.1
138,457 - 0.2
138,460 - 0.5
138,464 + -0.6
138,614 + 1.9
138,638 + 0.9
138,653 - 1.7
138,675 + 1.9
138,678 + 0.8
138,716 - 0.9
138,726 - -0.8
138,860 + -2.4
138,875 - 0.4
138,886 + -0.1
139,013 - 0.6
139,034 + -0.3
139,059 - -1.1
139,078 - 0.9
139,079 + -0.7
139,081 + 1.2
139,094 - 2.2
139,133 - -0.0
139,143 + 0.1
139,222 + 0.6
139,225 - 0.9
139,233 - 0.5
139,236 + 3.4
139,237 + 2.6
139,252 + 0.4
139,272 + -0.7
139,287 - -1.0
139,292 - 0.1