Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1756

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1755: 10123 - K00326 E1.6.2.2 cytochrome-b5 reductase, at 123629 to 124708 10123 mRNA_1756: 10124 - KOG2821 RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin A, at 124866 to 126194 10124 mRNA_1757: 10125 - KOG1426 FOG RCC1 domain, at 126348 to 129051 10125

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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123,924 + 10123 mRNA_1755 0.27 0.1
123,926 + 10123 mRNA_1755 0.28 0.5
123,934 - 10123 mRNA_1755 0.28 0.9
123,942 + 10123 mRNA_1755 0.29 0.7
124,349 - 10123 mRNA_1755 0.67 2.4
124,497 + 10123 mRNA_1755 0.80 1.1
124,501 - 10123 mRNA_1755 0.81 1.1
124,634 - 0.8
124,640 - 0.2
124,781 - 0.3
124,798 - -0.1
124,813 - 1.5
124,818 - -1.6
124,853 - 1.4
124,960 - -0.4
125,073 - 10124 mRNA_1756 0.16 0.0
125,075 - 10124 mRNA_1756 0.16 -1.5
125,373 - 10124 mRNA_1756 0.38 1.2
125,397 - 10124 mRNA_1756 0.40 -0.6
125,429 - 10124 mRNA_1756 0.42 -1.5
125,539 - 10124 mRNA_1756 0.51 -0.5
125,562 - 10124 mRNA_1756 0.52 0.3
125,567 + 10124 mRNA_1756 0.53 1.5
125,827 + 10124 mRNA_1756 0.72 0.6
125,889 + 10124 mRNA_1756 0.77 1.1
125,943 + 10124 mRNA_1756 0.81 0.4
125,948 + 10124 mRNA_1756 0.81 -0.2
126,167 + 0.2
126,333 - -0.3
126,418 - 0.1
126,429 - 2.7
126,434 + 1.6
126,593 - -0.3
126,603 - 0.5
126,757 + 10125 mRNA_1757 0.15 -0.5
126,880 - 10125 mRNA_1757 0.20 0.3
126,985 - 10125 mRNA_1757 0.24 -0.4
127,023 - 10125 mRNA_1757 0.25 -1.3
127,046 - 10125 mRNA_1757 0.26 1.0
127,146 - 10125 mRNA_1757 0.30 0.3