Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1749

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1748: 10116 - HMMPfam-Oxidoreductase family, NAD-binding Rossmann fold-PF01408,HMMPfam-Putative oxidoreductase C terminal-PF08635,SUPERFAMILY--SSF51735,SUPERFAMILY--SSF55347, at 108076 to 110507 10116 mRNA_1749: 10117 - Hypothetical Protein, at 111051 to 112240 10117 mRNA_1750: 10118 - K16185 RRAGA_B Ras-related GTP-binding protein A/B, at 113201 to 114530 10118

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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110,213 - 10116 mRNA_1748 0.88 -1.2
110,232 + 10116 mRNA_1748 0.89 -0.1
110,385 - 2.3
110,540 - 1.4
110,567 + 1.8
110,689 - 0.9
110,716 - 0.3
110,724 - -0.7
110,724 + 2.7
110,731 + -0.6
110,761 - 1.4
110,778 + -0.6
110,843 + 0.2
110,861 - 0.8
110,878 + -0.0
110,928 + 0.1
110,947 - 0.2
111,000 + 0.1
111,027 - 0.1
111,038 - 0.3
111,197 + 10117 mRNA_1749 0.12 0.8
111,722 - 10117 mRNA_1749 0.56 -0.1
111,732 - 10117 mRNA_1749 0.57 0.5
112,035 + 10117 mRNA_1749 0.83 0.8
112,107 - 10117 mRNA_1749 0.89 -0.9
112,165 + -0.7
112,176 + 1.2
112,178 + 0.1
112,226 - 1.2
112,471 - 0.5
112,486 + 1.3
112,487 + 0.7
112,505 + 1.8
112,511 + -0.4
112,513 - 2.3
112,522 + 0.1
112,589 + -0.0
112,612 + 2.0
112,612 + 0.1
112,618 - -0.2
112,638 - 0.2
112,657 + 0.2
112,660 + 0.3
112,664 - -0.6
112,666 - -1.0
112,685 - 2.3
112,685 + 1.3
112,686 + -1.7
112,687 + 0.6
112,687 - -0.7
112,712 - 1.0
112,776 - 0.2
112,823 + -0.7
112,827 - 0.3
112,831 - 1.6
112,854 - 0.6
112,855 + 1.6
112,857 + 0.6
112,858 + 2.6
112,858 - 1.0
112,863 + 0.4
112,870 + 1.7
112,878 + -0.5
112,901 - 0.3
112,910 + -0.4
112,910 + -0.5
112,910 - 2.2
112,911 + 0.5
112,911 + 1.1
112,911 + -0.2
112,911 - -0.5
112,912 + 0.7
112,919 + 1.3
112,927 + 1.8
112,939 + 0.2
112,944 + 0.1
112,956 + 0.6
112,971 - 0.1
112,998 - 0.1
113,001 + 0.5
113,005 - 1.1
113,007 + -1.0
113,017 + 0.4
113,017 + 1.8
113,168 + -2.1