Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1729

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1728: 10096 - HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-Fungal specific transcription factor domain-SM00906, at 55696 to 58007 10096 mRNA_1729: 10097 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 58480 to 59986 10097 mRNA_1730: 10098 - KOG4708 Mitochondrial ribosomal protein MRP17, at 60318 to 61237 10098

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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57,702 - 10096 mRNA_1728 0.87 1.5
57,979 - 1.5
58,434 + -0.1
58,702 + 10097 mRNA_1729 0.15 -1.3
59,158 + 10097 mRNA_1729 0.45 1.6
59,167 - 10097 mRNA_1729 0.46 0.7
59,173 + 10097 mRNA_1729 0.46 0.1
59,207 - 10097 mRNA_1729 0.48 1.3
59,274 - 10097 mRNA_1729 0.53 1.5
59,288 - 10097 mRNA_1729 0.54 1.4
59,291 + 10097 mRNA_1729 0.54 0.8
59,298 + 10097 mRNA_1729 0.54 -0.5
59,324 - 10097 mRNA_1729 0.56 1.2
59,324 - 10097 mRNA_1729 0.56 0.9
59,369 + 10097 mRNA_1729 0.59 0.1
59,375 + 10097 mRNA_1729 0.59 -0.3
59,389 - 10097 mRNA_1729 0.60 0.1
59,391 + 10097 mRNA_1729 0.60 2.8
59,407 - 10097 mRNA_1729 0.62 1.4
59,535 - 10097 mRNA_1729 0.70 1.6
59,536 + 10097 mRNA_1729 0.70 2.6
59,566 + 10097 mRNA_1729 0.72 1.6
59,570 + 10097 mRNA_1729 0.72 -0.6
59,720 - 10097 mRNA_1729 0.82 0.9
59,740 + 10097 mRNA_1729 0.84 0.6
59,740 + 10097 mRNA_1729 0.84 0.9
59,741 + 10097 mRNA_1729 0.84 0.8
59,749 - 10097 mRNA_1729 0.84 -2.1
59,755 + 10097 mRNA_1729 0.85 1.3
59,791 + 10097 mRNA_1729 0.87 -0.1
59,877 + -0.1
59,896 - -0.1
59,908 - 0.7
60,020 - -0.6
60,036 - 0.1
60,036 - -0.3
60,040 + 2.9
60,047 - -0.4
60,048 + 0.2
60,061 - 1.6
60,062 + 0.7
60,065 - -0.6
60,068 + -0.3
60,069 + 0.0
60,070 + 1.5
60,083 + 0.2
60,086 - 0.5
60,089 + -1.7
60,089 - -0.2
60,090 + -0.3
60,143 + -0.1
60,163 - -0.3
60,173 + 0.8
60,271 - 1.0