Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1719

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1718: 10086 - HMMPfam-Cytochrome C oxidase copper chaperone (COX17)-PF05051,SUPERFAMILY--SSF47072, at 26598 to 27052 10086 mRNA_1719: 10087 - Hypothetical Protein, at 27838 to 28571 10087 mRNA_1720: 10088 - HMMPfam-Zinc finger, C2H2 type-PF00096,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SUPERFAMILY--SSF57667, at 29211 to 32060 10088

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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27,099 + 1.2
27,101 - 0.6
27,102 + 0.1
27,105 - -0.3
27,136 + 0.3
27,226 - 0.1
27,527 - 0.7
27,536 + -0.7
27,660 - -2.3
27,683 - 0.5
27,694 - 0.8
27,711 - 0.6
27,777 + -0.4
27,983 - 10087 mRNA_1719 0.20 -0.2
28,111 - 10087 mRNA_1719 0.37 0.6
28,156 + 10087 mRNA_1719 0.43 -0.1
28,359 - 10087 mRNA_1719 0.71 1.6
28,380 - 10087 mRNA_1719 0.74 0.1
28,426 - 10087 mRNA_1719 0.80 1.4
28,545 - 1.8
28,694 - -0.4
28,716 - 0.7
28,757 + -1.0
29,016 - 0.2
29,145 - 0.6
29,145 - 0.5
29,449 + 0.6