Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1659

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1658: 10026 - K02893 RP-L23Ae, RPL23A large subunit ribosomal protein L23Ae, at 826831 to 828048 10026 mRNA_1659: 10027 - K08741 MSH5 DNA mismatch repair protein MSH5, at 828859 to 833266 10027 mRNA_1660: 10028 - Hypothetical Protein, at 833434 to 834294 10028

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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828,235 + 0.8
828,264 + 0.6
828,271 + 0.0
828,272 + 0.4
828,277 + 3.4
828,417 + 0.9
828,720 - -0.4
829,001 + -0.1
829,022 - 1.1
829,090 - 0.4
829,227 + 1.6
829,560 + 10027 mRNA_1659 0.16 0.2
830,296 + 10027 mRNA_1659 0.33 -1.2
830,375 + 10027 mRNA_1659 0.34 1.5
830,598 + 10027 mRNA_1659 0.39 1.2
831,034 + 10027 mRNA_1659 0.49 0.2
831,146 - 10027 mRNA_1659 0.52 -1.8
831,607 - 10027 mRNA_1659 0.62 0.2
831,720 - 10027 mRNA_1659 0.65 1.3
831,741 + 10027 mRNA_1659 0.65 0.2
831,901 + 10027 mRNA_1659 0.69 2.0
831,997 + 10027 mRNA_1659 0.71 -0.4
832,044 + 10027 mRNA_1659 0.72 0.3
832,063 + 10027 mRNA_1659 0.73 -0.3
832,165 + 10027 mRNA_1659 0.75 -0.1
832,287 + 10027 mRNA_1659 0.78 0.1
832,368 + 10027 mRNA_1659 0.80 -0.3
832,455 - 10027 mRNA_1659 0.82 0.8
832,595 + 10027 mRNA_1659 0.85 -0.7
832,635 - 10027 mRNA_1659 0.86 1.1
832,738 - 10027 mRNA_1659 0.88 0.9
832,785 + 10027 mRNA_1659 0.89 0.6
832,895 - 0.7
833,026 + 0.2
833,027 - 0.0
833,066 - -0.6
833,193 - 1.0
833,328 - -0.6
833,332 - 2.1
833,345 - 0.1
833,370 + -1.3
833,471 + -1.1
833,506 + -0.0
833,523 - 10028 mRNA_1660 0.10 0.3
833,659 + 10028 mRNA_1660 0.26 0.9
833,805 + 10028 mRNA_1660 0.43 -0.5
833,930 + 10028 mRNA_1660 0.58 1.9
833,931 - 10028 mRNA_1660 0.58 1.2