Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1623

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1622: 9990 - K17738 ARD D-arabinitol 2-dehydrogenase, at 743761 to 745808 9990 mRNA_1623: 9991 - Hypothetical Protein, at 746291 to 747597 9991 mRNA_1624: 9992 - BLAST calcium-transporting ATPase [Pseudozyma hubeiensi..., at 747802 to 749738 9992

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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745,307 - 9990 mRNA_1622 0.75 0.6
745,580 + 9990 mRNA_1622 0.89 0.5
745,601 + 9990 mRNA_1622 0.90 0.8
745,701 - -0.0
745,747 - -1.3
745,749 + -2.0
745,750 - -0.9
745,751 + 1.3
745,754 + 0.4
745,757 + 1.1
745,759 - -0.0
745,771 - 0.7
745,771 - 3.1
745,793 + -1.7
745,804 - 1.6
745,832 - -0.8
745,837 + 0.9
745,922 + 0.7
745,995 + 0.4
746,010 - 0.5
746,018 + 0.1
746,179 + -2.5
746,478 - 9991 mRNA_1623 0.14 -0.5
747,177 - 9991 mRNA_1623 0.68 -0.8
747,207 - 9991 mRNA_1623 0.70 0.6
747,476 - 0.4
747,478 - 2.3
747,496 - -2.3
747,625 + -0.4
747,632 - -0.0
747,639 + 0.9
747,644 + -0.8
747,789 + -1.4
747,801 + -0.3
747,804 - -0.5
747,805 - -1.0
747,813 + 0.0
747,815 + 1.0
747,823 - -0.8
748,073 - 9992 mRNA_1624 0.14 -0.5
748,089 + 9992 mRNA_1624 0.15 0.5
748,090 - 9992 mRNA_1624 0.15 1.7