Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1607

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1606: 9974 - Hypothetical Protein, at 705021 to 705665 9974 mRNA_1607: 9975 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 706172 to 709618 9975 mRNA_1608: 9976 - K19704 PTC1 protein phosphatase PTC1, at 709938 to 711637 9976

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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705,219 - 9974 mRNA_1606 0.31 -4.6
705,342 + 9974 mRNA_1606 0.50 1.8
705,650 + -1.6
705,839 - 1.7
705,946 + 0.2
705,982 - 0.4
706,004 - 0.5
706,016 - -0.2
706,095 - 0.6
706,096 + -0.7
706,110 + -0.8
706,427 + -0.8
706,438 - 0.5
706,522 + 9975 mRNA_1607 0.10 0.8
706,821 - 9975 mRNA_1607 0.19 -0.3
706,855 + 9975 mRNA_1607 0.20 -0.9
706,945 - 9975 mRNA_1607 0.22 1.1
707,971 - 9975 mRNA_1607 0.52 1.9
708,015 + 9975 mRNA_1607 0.53 0.7
708,036 + 9975 mRNA_1607 0.54 -1.5
708,063 - 9975 mRNA_1607 0.55 1.4
708,070 + 9975 mRNA_1607 0.55 -0.8
708,130 - 9975 mRNA_1607 0.57 -1.4
708,164 - 9975 mRNA_1607 0.58 1.5
708,389 + 9975 mRNA_1607 0.64 -0.6
708,458 + 9975 mRNA_1607 0.66 0.3
708,493 + 9975 mRNA_1607 0.67 -0.6
708,866 + 9975 mRNA_1607 0.78 -0.1
708,871 - 9975 mRNA_1607 0.78 -0.2
709,019 + 9975 mRNA_1607 0.83 1.1
709,049 + 9975 mRNA_1607 0.83 0.8
709,085 - 9975 mRNA_1607 0.85 0.9
709,149 + 9975 mRNA_1607 0.86 -0.4
709,206 - 9975 mRNA_1607 0.88 -0.3
709,291 - -0.1
709,324 + 1.7
709,332 + 0.6
709,450 + 0.7
709,501 - -1.4
709,617 + -0.6
709,624 - 0.5
709,633 + 2.0
709,671 - 1.3
709,687 - -0.8
709,696 + 0.6
709,724 + 0.3
709,813 + 1.2
709,926 + -1.1
709,949 + 2.5
710,068 + 0.9
710,082 + -0.2
710,161 - 9976 mRNA_1608 0.13 0.1
710,204 + 9976 mRNA_1608 0.16 1.4
710,206 + 9976 mRNA_1608 0.16 1.4
710,536 + 9976 mRNA_1608 0.35 0.4