Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1588

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1587: 9955 - HMMPfam-Protein of unknown function (DUF3759)-PF12585, at 664438 to 664902 9955 mRNA_1588: 9956 - HMMPfam-Domain of unknown function (DUF202)-PF02656, at 665210 to 666583 9956 mRNA_1589: 9957 - Hypothetical Protein, at 666700 to 668966 9957

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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664,212 - -1.6
664,213 - -0.1
664,272 + -0.1
664,322 - -0.9
664,324 + -0.2
664,353 - -0.9
664,364 + 0.2
664,370 + 1.0
664,441 - -1.8
664,530 - 9955 mRNA_1587 0.20 0.5
664,551 - 9955 mRNA_1587 0.24 -0.3
664,682 - 9955 mRNA_1587 0.52 0.1
664,794 - 9955 mRNA_1587 0.77 -1.8
664,810 - 9955 mRNA_1587 0.80 -0.0
664,942 + -1.3
664,970 - -0.2
664,989 - 0.9
665,109 - 1.2
665,116 + 0.8
665,136 + 0.5
665,256 - 0.4
665,262 + -0.7
665,263 + -1.3
665,294 + -1.4
665,302 + 2.0
665,405 - 9956 mRNA_1588 0.14 1.2
665,452 - 9956 mRNA_1588 0.18 -1.0
665,565 - 9956 mRNA_1588 0.26 0.3
665,581 + 9956 mRNA_1588 0.27 1.7
665,589 + 9956 mRNA_1588 0.28 0.9
665,742 + 9956 mRNA_1588 0.39 0.6
666,727 + -0.9
667,153 + 9957 mRNA_1589 0.20 -0.7