Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1580

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1579: 9947 - Hypothetical Protein, at 648385 to 649747 9947 mRNA_1580: 9948 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 650033 to 651263 9948 mRNA_1581: 9949 - HMMPfam-Protein of unknown function (DUF3759)-PF12585, at 651787 to 652843 9949

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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649,191 - 9947 mRNA_1579 0.59 0.2
649,338 - 9947 mRNA_1579 0.70 0.1
649,357 - 9947 mRNA_1579 0.71 -1.4
649,506 + 9947 mRNA_1579 0.82 -0.5
649,511 - 9947 mRNA_1579 0.83 1.8
649,638 - -2.2
649,646 + 0.2
649,658 - -1.4
649,768 - -0.5
649,778 + 2.4
649,805 - -0.4
649,810 - -0.2
649,810 - 2.9
649,932 + -0.3
649,960 - -0.3
649,966 - 0.8
649,967 + -1.0
649,968 - 0.9
649,969 + 0.8
649,972 - 1.3
649,975 - -1.6
650,000 + 1.2
650,010 + 0.6
650,273 - 9948 mRNA_1580 0.19 -1.7
650,298 - 9948 mRNA_1580 0.22 -2.0
650,303 + 9948 mRNA_1580 0.22 0.4
650,423 + 9948 mRNA_1580 0.32 1.0
650,574 - 9948 mRNA_1580 0.44 -0.8
650,584 - 9948 mRNA_1580 0.45 1.3
650,683 + 9948 mRNA_1580 0.53 1.5
650,865 + 9948 mRNA_1580 0.68 1.7
651,318 - -1.9
651,450 - 0.8
651,564 - 1.1
651,597 + -0.5
651,609 - 0.9
651,609 + -0.3
651,629 - 0.2
651,638 - -1.9
651,640 + -1.0
651,645 - -0.1
651,648 - -1.7
651,653 + -0.7
651,659 + -0.3
651,671 - -0.3
651,677 + -1.2
651,678 - 0.2
651,680 + -2.0
651,844 - -0.5
651,851 + 0.0
651,960 + 9949 mRNA_1581 0.16 -0.0
651,969 + 9949 mRNA_1581 0.17 -0.7
652,144 - 9949 mRNA_1581 0.34 0.0