Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1576

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1575: 9943 - BLAST cipC protein [Aspergillus oryzae RIB40], at 634965 to 635420 9943 mRNA_1576: 9944 - KOG0737 AAA+-type ATPase, at 636089 to 637669 9944 mRNA_1577: 9945 - K03844 ALG11 alpha-1,2-mannosyltransferase, at 637857 to 639925 9945

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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635,166 + 9943 mRNA_1575 0.44 1.2
635,194 + 9943 mRNA_1575 0.50 -1.4
635,201 + 9943 mRNA_1575 0.52 0.5
635,210 - 9943 mRNA_1575 0.54 1.5
635,366 + 9943 mRNA_1575 0.88 0.3
635,371 + 9943 mRNA_1575 0.89 0.9
635,375 - -0.3
635,467 - -3.2
635,490 + 0.7
635,493 + 1.4
635,506 - -1.9
635,531 + 0.8
635,619 + -0.0
635,637 + -0.8
635,758 + -2.6
635,762 + 0.4
635,784 - 0.1
635,918 + -0.5
635,936 - -0.8
635,952 + -0.9
636,075 + -1.5
636,080 + -0.2
636,087 - -0.5
636,087 + 0.9
636,767 - 9944 mRNA_1576 0.43 -1.0
636,916 + 9944 mRNA_1576 0.52 -2.0
637,395 + 9944 mRNA_1576 0.83 0.8
637,674 + 2.8
637,783 + -0.8
637,795 + -0.3
637,808 + 0.7
637,827 + 0.7