Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1574

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1573: 9941 - KOG2022 Nuclear transport receptor LGL2 (importin beta superfamily), at 625284 to 628967 9941 mRNA_1574: 9942 - K06867 K06867 uncharacterized protein, at 629129 to 634398 9942 mRNA_1575: 9943 - BLAST cipC protein [Aspergillus oryzae RIB40], at 634965 to 635420 9943

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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628,710 - -0.1
629,028 + 0.2
630,468 - 9942 mRNA_1574 0.25 -0.2
630,721 + 9942 mRNA_1574 0.30 -2.5
631,477 + 9942 mRNA_1574 0.45 -0.3
631,674 - 9942 mRNA_1574 0.48 1.2
634,446 + 0.4
634,455 + 1.9
634,456 + -1.3
634,554 - 0.4
634,573 - -2.4
634,576 - 0.4
634,580 - -0.2
634,592 - 0.0
634,639 - -0.1
634,693 - -0.3
634,716 - 1.2
634,720 - 0.1
634,723 - -0.4
634,723 + 0.2
634,725 - -0.8
634,735 - 0.3
634,744 - 2.2
634,798 + 0.3
634,802 - 1.0
634,804 - -2.8
634,820 + 0.0
634,846 - -1.2
634,900 - 1.4
635,054 + 9943 mRNA_1575 0.20 1.4
635,074 - 9943 mRNA_1575 0.24 -1.0
635,166 + 9943 mRNA_1575 0.44 1.2
635,194 + 9943 mRNA_1575 0.50 -1.4
635,201 + 9943 mRNA_1575 0.52 0.5
635,210 - 9943 mRNA_1575 0.54 1.5
635,366 + 9943 mRNA_1575 0.88 0.3
635,371 + 9943 mRNA_1575 0.89 0.9
635,375 - -0.3