Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1571

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1570: 9938 - KOG2533 Permease of the major facilitator superfamily, at 617747 to 619889 9938 mRNA_1571: 9939 - K03695 clpB ATP-dependent Clp protease ATP-binding subunit ClpB, at 620682 to 623667 9939 mRNA_1572: 9940 - K02139 ATPeFF, ATP17 F-type H+-transporting ATPase subunit f, at 624173 to 624749 9940

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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619,852 - -0.5
619,863 - 1.2
619,991 - -1.6
620,004 - 1.1
620,019 - -0.0
620,022 - -1.0
620,028 + -0.7
620,029 - 4.1
620,029 + -0.5
620,029 + -0.2
620,029 + -0.1
620,038 - 0.7
620,042 + -1.0
620,043 - 0.4
620,044 + -1.1
620,046 + 0.7
620,054 + -0.3
620,060 + -1.9
620,087 - -1.7
620,093 - 3.8
620,094 - -0.0
620,157 + -2.1
620,172 - -0.0
620,184 + -1.8
620,190 + 3.2
620,191 + -0.6
620,214 + -1.0
620,220 - 0.1
620,240 - -1.8
620,248 + -0.1
620,284 + 0.3
620,292 + 0.6
620,295 + -2.2
620,301 + 1.1
620,305 - -0.1
620,305 + -1.2
620,305 + 0.1
620,306 - 0.4
620,308 - 0.0
620,308 + 0.4
620,311 - -2.2
620,316 - 0.3
620,322 + -0.9
620,332 - -2.4
620,336 - -0.7
620,359 + -1.2
620,359 - 1.0
620,361 - -1.0
620,361 - -1.0
620,408 + -1.8
620,421 + -0.2
620,446 - 0.5
620,468 - -1.8
620,477 + -0.3
620,480 - -1.8
620,485 + 0.4
620,489 + 0.6
620,509 + 0.5
620,517 - -0.0
620,536 + 1.5
620,607 - 0.1
620,654 - 0.4
620,667 + 1.6
621,206 - 9939 mRNA_1571 0.18 -1.3
621,213 + 9939 mRNA_1571 0.18 0.8
622,143 - 9939 mRNA_1571 0.49 0.0
623,148 + 9939 mRNA_1571 0.83 0.5
623,170 + 9939 mRNA_1571 0.83 -0.5
623,309 - 9939 mRNA_1571 0.88 -1.2
623,432 + -1.6
623,474 + 1.3
623,576 + 0.0
623,600 - 0.6
623,603 - 0.0
623,603 - -0.6
623,739 + -0.7
623,742 + 1.3
623,767 + -0.6
623,772 - -0.2
623,787 - 1.2
623,801 + 1.8
623,816 + -0.1
623,822 + 0.5
624,022 + 0.2
624,036 + -1.2
624,038 + 0.9
624,039 + 0.4
624,039 + -0.8
624,039 + 0.8
624,039 + -1.1
624,040 - -0.4
624,041 - -0.1
624,042 + -0.0
624,042 - -0.3
624,043 + -0.6
624,044 + -1.1
624,050 - 0.3
624,051 - -0.2
624,052 + 1.1
624,054 - 1.1
624,057 - 1.0
624,058 + -0.8
624,064 + 0.2
624,064 + 0.0
624,066 + 0.1
624,066 + -0.1
624,079 + -0.2