Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1517

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1516: 9884 - BLAST transmembrane ATP-binding protein ABC transporter [Rh..., at 492148 to 493899 9884 mRNA_1517: 9885 - HMMPfam-Alternative oxidase-PF01786,PIRSF--PIRSF005229, at 494782 to 496298 9885 mRNA_1518: 9886 - K03521 fixA, etfB electron transfer flavoprotein beta subunit, at 496923 to 498027 9886

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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493,826 - 0.2
493,853 + -1.6
493,863 + 4.1
493,867 + -0.2
493,908 - 2.2
493,923 - 1.0
493,926 + 0.3
493,939 - -0.6
493,943 - -0.6
493,951 - -0.5
493,977 - 0.8
494,022 + -1.6
494,025 + -0.1
494,033 + -2.0
494,033 - -0.2
494,037 + -0.4
494,039 - 1.1
494,054 - 1.4
494,060 + 0.6
494,112 - -0.8
494,114 - 0.7
494,115 + 1.4
494,120 - -0.1
494,124 + -0.0
494,127 + 0.1
494,131 + -0.3
494,132 - 0.3
494,163 - -0.9
494,169 + -0.3
494,184 + 0.6
494,195 - -0.1
494,204 + -0.5
494,204 - -0.1
494,214 + 0.5
494,214 - 0.3
494,219 + 0.1
494,219 + 0.1
494,229 + 0.6
494,240 + 3.5
494,240 + -0.4
494,241 + 0.0
494,261 + -1.5
494,271 - -1.0
494,271 - 1.5
494,277 + 0.9
494,286 - 0.1
494,287 - -0.7
494,289 - -0.0
494,291 + -0.6
494,292 + -0.4
494,311 - -1.4
494,311 - 2.0
494,318 + -1.5
494,318 + 0.2
494,321 + 0.3
494,321 + -0.6
494,323 - 0.2
494,325 - -0.1
494,326 - 0.1
494,330 - 0.1
494,330 + -0.0
494,332 + 0.4
494,335 + 0.9
494,343 + -1.4
494,390 + 1.1
494,431 + 0.5
494,450 + 2.0
494,473 + 2.2
494,475 + -0.2
494,530 + -0.2
494,572 + 0.2
494,583 + 1.3
494,594 + 0.3
494,625 - -0.5
494,626 + -1.2
494,654 - -0.1
494,658 + -1.3
494,687 - 2.2
494,740 - 0.4
494,791 + 1.3
494,823 + 1.5
494,880 + 0.1
494,901 - 1.8
494,919 - -0.2
494,967 + 9885 mRNA_1517 0.12 -0.3
494,981 - 9885 mRNA_1517 0.13 0.5
495,002 + 9885 mRNA_1517 0.15 -0.2
495,006 + 9885 mRNA_1517 0.15 0.0
495,054 - 9885 mRNA_1517 0.18 -2.4
495,125 + 9885 mRNA_1517 0.23 1.8
495,151 - 9885 mRNA_1517 0.24 0.2
495,156 + 9885 mRNA_1517 0.25 -1.9
495,216 - 9885 mRNA_1517 0.29 -1.1
495,216 - 9885 mRNA_1517 0.29 0.8
495,356 - 9885 mRNA_1517 0.38 -0.6
495,470 + 9885 mRNA_1517 0.45 -0.0
495,479 + 9885 mRNA_1517 0.46 -0.7
496,039 - 9885 mRNA_1517 0.83 1.0
496,039 - 9885 mRNA_1517 0.83 0.2
496,317 + -0.2
496,346 - 0.2
496,400 - -1.4
496,466 + -0.3
496,476 + 0.7
496,488 + -0.0
496,556 + 0.4
496,578 - 0.4
496,595 + -0.4
496,596 + 1.6
496,606 + 0.2
496,613 + 1.0
496,652 - -0.5
496,690 + -1.3
496,691 + -0.3
496,696 + -0.1
496,696 + -1.2
496,699 - 0.5
496,716 - -0.8
496,753 - 0.8
496,772 - 0.8
496,772 - -1.9
496,772 - 0.4
496,782 + -0.1
496,785 - -0.4
496,787 + 1.6
496,789 + 3.0
496,795 + 0.1
496,799 + 0.1
496,799 + -1.5
496,806 + 0.2
496,823 + 0.1
496,909 + -0.9
497,184 + 9886 mRNA_1518 0.24 -1.2