Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1515

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1514: 9882 - K07050 AARSD1, ALAX misacylated tRNA(Ala) deacylase, at 486604 to 488267 9882 mRNA_1515: 9883 - HMMPfam-Up-regulated During Septation-PF15456,SUPERFAMILY--SSF57997, at 488446 to 491742 9883 mRNA_1516: 9884 - BLAST transmembrane ATP-binding protein ABC transporter [Rh..., at 492148 to 493899 9884

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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487,453 - 9882 mRNA_1514 0.51 1.8
487,913 - 9882 mRNA_1514 0.79 0.8
488,058 + 9882 mRNA_1514 0.87 -0.0
488,073 + 9882 mRNA_1514 0.88 0.3
488,166 - 1.3
488,185 - -0.2
488,341 - 0.1
488,372 + 0.4
488,382 - -0.2
488,493 - 0.5
488,498 - -0.3
488,500 - 1.4
488,505 + 2.1
488,513 + 0.5
488,521 + 0.2
488,647 + -0.5
488,793 + 9883 mRNA_1515 0.11 1.6
488,822 + 9883 mRNA_1515 0.11 -1.1
488,926 + 9883 mRNA_1515 0.15 -2.5
489,243 + 9883 mRNA_1515 0.24 -0.4
489,275 + 9883 mRNA_1515 0.25 0.3
489,584 - 9883 mRNA_1515 0.35 1.1
489,709 - 9883 mRNA_1515 0.38 0.3
489,788 + 9883 mRNA_1515 0.41 -1.8
490,130 + 9883 mRNA_1515 0.51 0.5
490,246 - 9883 mRNA_1515 0.55 2.2
490,385 - 9883 mRNA_1515 0.59 0.3
490,566 - 9883 mRNA_1515 0.64 0.8
490,610 - 9883 mRNA_1515 0.66 -0.4
491,018 + 9883 mRNA_1515 0.78 -1.0
491,321 - 9883 mRNA_1515 0.87 -0.8
491,327 - 9883 mRNA_1515 0.87 -0.3
491,483 - 1.7
491,490 + 0.3
491,616 - -1.7
491,636 - -0.1
491,753 + 0.0
491,756 - 0.3
491,758 + 0.4
491,759 + -1.3
491,896 - 0.1
491,900 + 0.1
491,904 - 0.8
491,910 - 0.0
491,912 + -0.1
491,932 - -0.5
492,072 + 1.4
492,074 - -0.7
492,076 - 2.1
492,128 + -0.4
492,133 - 0.9
492,204 - 0.5