Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1497

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1496: 9864 - HMMPfam-Major Facilitator Superfamily-PF07690,PRINTS-Tetracycline resistance protein TetB signature-PR01036,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 447917 to 450188 9864 mRNA_1497: 9865 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 450422 to 453504 9865 mRNA_1498: 9866 - K11129 NHP2, NOLA2 H/ACA ribonucleoprotein complex subunit 2, at 454122 to 455195 9866

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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449,514 - 9864 mRNA_1496 0.70 -1.1
449,638 + 9864 mRNA_1496 0.76 2.5
449,925 + 9864 mRNA_1496 0.88 -1.7
449,968 + 1.8
450,031 + -3.5
450,203 - 2.6
450,285 - 0.6
450,394 + 0.2
450,534 - 2.1
450,729 + -0.3
451,098 + 9865 mRNA_1497 0.22 2.2
451,117 - 9865 mRNA_1497 0.23 -1.2
451,207 - 9865 mRNA_1497 0.25 1.0
451,366 - 9865 mRNA_1497 0.31 0.8
451,377 + 9865 mRNA_1497 0.31 0.9
451,441 + 9865 mRNA_1497 0.33 -0.2
451,507 + 9865 mRNA_1497 0.35 1.0
451,558 - 9865 mRNA_1497 0.37 1.3
451,561 - 9865 mRNA_1497 0.37 1.2
451,573 + 9865 mRNA_1497 0.37 0.8
451,836 + 9865 mRNA_1497 0.46 0.6
451,837 - 9865 mRNA_1497 0.46 0.2
452,025 + 9865 mRNA_1497 0.52 -0.0
452,135 - 9865 mRNA_1497 0.56 1.2
452,193 - 9865 mRNA_1497 0.57 -1.4
452,439 + 9865 mRNA_1497 0.65 -0.1
452,684 - 9865 mRNA_1497 0.73 -0.1
452,742 - 9865 mRNA_1497 0.75 0.3
452,846 - 9865 mRNA_1497 0.79 0.4
452,980 - 9865 mRNA_1497 0.83 -0.2
453,007 - 9865 mRNA_1497 0.84 0.8
453,014 - 9865 mRNA_1497 0.84 0.0
453,023 - 9865 mRNA_1497 0.84 -0.5
453,133 + 9865 mRNA_1497 0.88 0.4
453,167 - 9865 mRNA_1497 0.89 -0.3
453,280 - -0.0
453,300 + 0.5
453,318 + -0.9
453,421 - 0.7
453,467 + -0.9
453,563 - -0.7
453,596 - 0.3
453,598 - 0.7
453,602 - 0.9
453,603 - -0.6
453,606 + -2.2
453,625 + 0.7
453,635 - 0.3
453,638 - -0.3
453,638 + 1.6
453,653 + -1.3
453,658 + -1.0
453,667 + 2.3
453,682 - -3.9
453,771 + 0.9
453,793 - 1.3
453,795 - 0.2
453,816 + -0.0
453,818 - -0.3
453,822 - 0.3
453,833 + 0.8
453,833 - 0.7
453,834 + 0.1
453,836 - 0.6
453,837 + 0.2
453,856 + -0.8
453,874 + 0.5
453,968 + 0.9
453,974 + 0.9
453,990 + -1.0
453,991 + 1.5
453,993 - 1.2